Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8558 168 2e-36 seq6001 154 4e-32 seq1010 143 6e-29 seq2241 140 8e-28 seq3070 138 3e-27 seq1561 138 3e-27 seq11356 136 1e-26 seq2057 132 1e-25 seq11454 118 3e-21 >seq8558 Length=1191863 Score = 168 bits (186), Expect = 2e-36 Identities = 172/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | ||||||||||| || || || || || || |||||||| |||| Sbjct 299806 AGGTCAAAATGC---AGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 299862 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||||||||| || ||||| ||||| || ||||| || Sbjct 299863 TGG--AGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 299920 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 299921 CCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 299980 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| ||||| ||||| || || Sbjct 299981 TTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGT 300022 >seq6001 Length=82083 Score = 154 bits (170), Expect = 4e-32 Identities = 169/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| |||| || | || ||||||||||| | || || || || |||||||| |||| Sbjct 45833 AGGTCAAAAGGC---AGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGG 45777 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| |||||||| || Sbjct 45776 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGAAAAAGAAGGCAT 45719 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || | |||||||| |||||||| ||||| Sbjct 45718 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAAGCAAACAGCTGGAAGATGGCCACACTCT 45659 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 45658 TTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 45617 >seq1010 Length=438066 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| | | ||||| |||||||| ||| |||||| Sbjct 115028 CAGATTTTCGTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCCTCAGAT 115087 Query 177984 ACCATCG-AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || | | || || || |||| |||||||| |||||||| ||||| |||||||| Sbjct 115088 ACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCAGCA 115147 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | |||| ||||| || || || || || |||||||| | ||| | || || || ||| | Sbjct 115148 AAGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGACGTACTTTGGCTGACTACAACAT 115207 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| ||||||| Sbjct 115208 TCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 115243 >seq2241 Length=1355799 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 781427 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 781368 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 781367 GTAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 781308 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || || |||||| | | | | | || || ||| | Sbjct 781307 AGACTGATCTTTGCAGGCAAGCAACTGGACGATGGACGTATTTTGTCTGACTACAACATT 781248 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 781247 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 781213 >seq3070 Length=217634 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||| || || || || || || ||||||| |||||||| | ||| Sbjct 177916 CAGATCTTCGTGACGACCCTGACTGGCAAGACCGTCACCCTGGAGGTGGAGTCCAGTGAC 177857 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||| || ||||| |||| | |||||||| Sbjct 177856 ACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCTCCTTGACCAGCAG 177797 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | |||||| | ||||| ||| || Sbjct 177796 AGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATC 177737 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||| || || Sbjct 177736 CAGAAAGAGTCTACCCTGCACCTGGT 177711 >seq1561 Length=353970 Score = 138 bits (152), Expect = 3e-27 Identities = 158/209 (76%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 202899 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 202956 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT-CCCTCCGGACCAG 178040 || ||||||||||||| || ||||| ||||| || ||||| || ||| || |||||| Sbjct 202957 ACGCCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCTGACCAG 203016 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || |||||||| |||||||| | |||||| | ||||||||| Sbjct 203017 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTATAAC 203076 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| | ||| | || ||||| || || Sbjct 203077 ATCCAGAGAGAGTTGACCCTGCACCTGGT 203105 >seq11356 Length=1134914 Score = 136 bits (150), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 1059219 CAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1059162 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 1059161 ACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 1059102 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| || ||||| | || || | || || ||| Sbjct 1059101 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 1059042 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 |||| |||||||| || |||||| Sbjct 1059041 TCCAGAAAGAATCCACTCTGCAT 1059019 >seq2057 Length=292531 Score = 132 bits (146), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| |||||||| ||| || || Sbjct 86780 CAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTCGAACCCTTGGAT 86838 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||| |||||||| | || ||||||||| Sbjct 86839 ACAATAGAAAATGT-AAGGCCAAGATCCAGGACAAGGAAGGAATTTCACCTGACCAGCAA 86897 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | || || ||| | Sbjct 86898 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACTACAACATT 86957 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| |||| |||||||| Sbjct 86958 CAAAAGGAGTCCACTCTTCATATTGTGTTGAGACT 86992 >seq11454 Length=977069 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| |||| || || ||||| || || ||||| ||| |||| ||| ||||| Sbjct 83037 CAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTCAGAT 82978 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||||||||| ||||||||| Sbjct 82977 ACAATAGAAAATGTAAAGACCAAGATGCAGGATAAAGAAGGAATCCCTCCTGACCAGCAA 82918 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||| ||||| || || || || || || ||||| Sbjct 82917 AGACTGATCTTTGCTGGCAAGCAACTGGAGGATGG 82883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203550583518934