Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8558 120 3e-22 seq11356 107 2e-18 seq1478 105 6e-18 seq1561 102 8e-17 seq3070 93.3 4e-14 seq6001 84.2 2e-11 >seq8558 Length=1191863 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 300044 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATC 299985 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 299984 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 299925 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 299924 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 299865 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| ||||| |||||||||||||| || Sbjct 299864 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTT 299811 >seq11356 Length=1134914 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| ||| || ||||| ||||| ||||| || ||||||||| | || || Sbjct 1059014 ACCAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 1059073 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||| || || | Sbjct 1059074 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCTTGG 1059133 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 1059134 ATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1059193 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 1059194 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1059222 >seq1478 Length=366608 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | |||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 273106 ACAGCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 273047 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || | ||||| |||| | ||||| ||||| || || || || | ||| ||||| || Sbjct 273046 AGAAATAGTGCGGCCGTCTTACAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGC 272987 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || ||| | | || ||||| | | ||||| || | ||| Sbjct 272986 GGGCATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTC 272927 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || |||||||| ||||| |||| |||||||| Sbjct 272926 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 272876 >seq1561 Length=353970 Score = 102 bits (112), Expect = 8e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||| | || ||| || | ||||| | ||||| ||||| || ||| |||| ||||| Sbjct 203133 TACTTAACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCAACTCTCTCTGGATGTT 203074 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||| || || || ||||| | || || ||||| ||||| || || || || | ||| || Sbjct 203073 ATAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTG 203014 Query 41746 GTCCGCGGGA-ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGC 41804 ||| | ||| | || ||||| ||| ||| || ||||| | | | ||| | Sbjct 203013 GTCAGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGCGTCAC 202954 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | | ||||||||||| || || || ||||| |||| ||||| ||||| |||||||| Sbjct 202953 TGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 202896 >seq3070 Length=217634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| || || || || ||||| | || || Sbjct 177711 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 177770 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| || || || || | ||| ||||| | | | || ||||| ||| | Sbjct 177771 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAAGGAGGATGCCTTCCTTATCCTGG 177830 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || ||||||||||||| || | || || Sbjct 177831 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGACGGTCTTG 177890 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||| | ||||| |||||||| Sbjct 177891 CCAGTCAGGGTCGTCACGAAGATCTGCAT 177919 >seq6001 Length=82083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | |||| || ||||| ||||| || ||| ||||| ||||| || || Sbjct 45595 ACAGCCACCCCTCAGACATAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 45654 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||| | | || || ||||| |||| || || || || | ||| ||||| | Sbjct 45655 AGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCTTGCAAAGATGAGCCTCTGCTGGTCAGG 45714 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || ||| ||| || ||||| | | ||||| || | ||| Sbjct 45715 GGGGATGCCTTCTTTTTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 45774 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 |||||||| || || || || || |||| || || ||||| |||||| Sbjct 45775 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGC 45823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462236324473200