Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq18562 190 1e-43 seq66558 159 2e-34 seq95250 125 5e-24 seq145711 82.4 6e-11 >seq18562 Length=18598 Score = 190 bits (210), Expect = 1e-43 Identities = 491/739 (66%), Gaps = 13/739 (2%) Strand=Plus/Minus Query 101541 CCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTCATCTGCT 101599 |||| | ||||||||| | ||||| || || || ||| ||| | || ||| || || Sbjct 12982 CCATTTCCATTTTAATAGTCGGGTGGGGATTGTATCCTTC-AATCTGAAAGTCTTCAGCC 12924 Query 101600 TTAAAGTCATCAAT-GCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGG 101658 | ||||||||||| || | || | |||| | | | | || | | || ||||| || Sbjct 12923 CTGAAGTCATCAATTGCCTCAA-CTTTTCGAAGGATTTTGAGCTTCAGGAAAGGTCTTGG 12865 Query 101659 AGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCC 101718 || | | ||||| ||| || | ||| | |||| | || | ||| |||||||| Sbjct 12864 TTCTCACTGAAGCTGCAGTTTCAGCGGCTCAGTATGATTCAGGTAAACGTGTGCATCTCC 12805 Query 101719 TATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAA 101778 | ||| || | ||| || || ||| ||| ||| || || |||||| || | Sbjct 12804 CAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGCGATCATGTGGGTGAG 12745 Query 101779 AAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATA 101838 || || ||||| | ||||| || || | || | ||||| || ||||| || || || Sbjct 12744 CAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTCTGCTGACCTCTGGTA 12685 Query 101839 CAGTTGACAGGAAAGCTTTCCAT----CAC--AGACA--TAAAATTGACTTAATACATGA 101890 || || ||||| |||| |||| ||| ||||| || || || | | |||| Sbjct 12684 TAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAGAACTGGCAAAGGGCATGG 12625 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 || || || | |||| ||||| ||| |||||||||||||| | || ||| Sbjct 12624 CATGGAGGTAGGGCCATGAAAGGAAGATCTTTTGGATTCCAAGCACACAGAATGATTCTT 12565 Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 || || ||||| || ||||| || | ||||||| || || | |||| | ||||||| Sbjct 12564 CTGTCAGTAGGTTTGGTTTTGATCATGTCAATCACCTTTTGCAGTTGGCCCACTCCTTGA 12505 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 ||| |||||| | | | ||| |||||||| || ||||||||||||||||| || Sbjct 12504 CCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCC- 12446 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || | ||| || || | |||| | | || ||||| ||| | || Sbjct 12445 TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCCAAGGCCATCCAGGAAGTCA 12386 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | ||| ||||| |||||||| || | ||| || | ||| || ||||| | || Sbjct 12385 CGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGACAGTTCTTTAGCATTTGTG 12326 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| ||| || || | || || |||| || || | || || Sbjct 12325 GATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTCCAGAACACACATTTGGTT 12266 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | || |||||||||| Sbjct 12265 GTCAGCAGAGGAAATTCAT 12247 >seq66558 Length=42017 Score = 159 bits (176), Expect = 2e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26957 GGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGG 27016 ||| || ||||| |||||||| ||| |||| ||||||||||| ||||| || || | || Sbjct 41220 GGGGGTTACGCAGGTGCAGCCCACATTCACCAGCATCTTCTCCAGCCTGAAGGAGTGGGG 41161 Query 27017 GCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCAT 27076 |||| | ||| | | |||||| || || |||||||| ||||| ||||| ||||||| Sbjct 41160 GCAGTGCTGAGGATCCCTGCGCAAGACCAGGATCTCTTGCTGGATGGGGACGGAGTTCAG 41101 Query 27077 GTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCCCA 27136 ||||| || | ||||| |||| | ||||| |||| ||| |||||||| ||||| Sbjct 41100 GTGGTGGTTGATCTTCCCTTCAGGGCTGACACAGAACAAGTTGCGGCACTTTGCCTCCCA 41041 Query 27137 AATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||||||||| ||||| || | || |||||||| Sbjct 41040 GATCACAGAGGGGTATCTCTCACGGTCCTCATTGCG 41005 >seq95250 Length=14987 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||| ||| | |||||||| || ||||||||||| Sbjct 14026 CTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCAGG 14085 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| |||||||||||||| |||||||||||| || Sbjct 14086 AATGGAGAACCAGGTCTTCTTACCCATAATCACCAAATTCTGTTTACCT 14134 Score = 114 bits (126), Expect = 9e-21 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4163 CTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTG 4222 ||||||| |||||||| ||||| | |||||| |||||||| |||||||||| |||||||| Sbjct 6930 CTTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTG 6989 Query 4223 GCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTG 4282 | | || | |||||||| |||||||| | ||| | || | ||||||||||| | || Sbjct 6990 GATCCTCAATCAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTTTG 7049 Query 4283 GAAGCTCCTTTAGTTC 4298 || | ||| | || || Sbjct 7050 GAGGTTCCCTGAGGTC 7065 Score = 107 bits (118), Expect = 1e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| || |||| | ||||| |||||||||||| ||||||| |||||| || | ||| Sbjct 4865 AAGTTTATAGCTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTTCAT 4924 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||||||||| |||| || ||| | |||| ||||| || | ||| | Sbjct 4925 GATCCTGGTCACAAACAGTTTCAGATGGCCTGGCTTGGTCATGGCTTCCTTTGAAACAAA 4984 Query 4176 AC 4177 || Sbjct 4985 AC 4986 >seq145711 Length=17273 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 14600 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 14659 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | | |||| | | || ||||| ||| | || | ||| ||||| |||||||| | Sbjct 14660 CTTTTCTGCTAGAGAATCCAAGGCCATCCAGGAAGTCACGAGACCCATTGGCATCCCAGA 14719 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | ||| || | ||| || ||||| Sbjct 14720 TTTTCACTCCCCTGGATGACAGTTCTTT 14747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360470147924651