Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq161317 107 1e-18 seq548 96.9 3e-15 seq174782 91.5 1e-13 seq79216 89.7 4e-13 seq104553 82.4 6e-11 >seq161317 Length=2104 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || || | |||||| ||||| || || ||||||||||||||| Sbjct 1078 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTT 1137 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||| || || || || ||||||| | |||||||| ||| Sbjct 1138 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGA 1197 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| ||| | ||| || | | | |||||||| || |||| Sbjct 1198 ATACCCTCCTTGTCCTGAATCTTGCT-CTTCACGTTGTCGATAGTGTCACTGGACTCGAC 1256 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || ||||| | || || |||||||| ||||| Sbjct 1257 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 1304 >seq548 Length=19863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 18102 CCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATT 18161 |||| || | ||| |||| ||| || || || ||||| |||||||||||||| | | Sbjct 10979 CCCCACAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCCGAGAGA 10920 Query 18162 GTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACG 18221 || | ||| |||| ||||||||| || | || |||| || || || || | | Sbjct 10919 GTGCAGCCATCCTCCAGCTGTTTGCCCACAAACATCAGTCACTGCTGGTCAGGTGGGATG 10860 Query 18222 CCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTC 18280 || ||||| || |||| | || ||||| | ||| ||||||| ||||||| || Sbjct 10859 CCCTCCTTGTCTTGGATTT-TAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTC 10801 Query 18281 AATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 10800 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10756 >seq174782 Length=7384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || |||||||||| ||| | | || | ||||| | ||| | ||||| || || | Sbjct 90 AAGACTTTTTCTTTTTCTTAGCGCCACCACAAAGTCTCAATACAAGATGAAGAGTAGACT 149 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| || || ||| ||| Sbjct 150 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGA 209 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||||||||| Sbjct 210 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 246 >seq79216 Length=33065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 3650 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 3709 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 3710 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCT 3769 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | ||| ||||| | |||||| || | ||||||| | Sbjct 3770 TGGATCT-TGGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 3828 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || ||||| || |||||||| Sbjct 3829 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTT 3864 >seq104553 Length=43841 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 35444 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACT 35503 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 35504 CCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGA 35563 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | ||| |||| ||||| || | ||||||||||| Sbjct 35564 TCAGTTTTTGCTGATCAGGAGGAATTCCTTCCTTATC 35600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378523829939745