Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq41434 127 4e-24 seq172910 87.8 4e-12 seq39192 87.8 4e-12 >seq41434 Length=11022 Score = 127 bits (140), Expect = 4e-24 Identities = 295/439 (67%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||| || |||||| ||||||| ||| | ||| |||| || |||||| Sbjct 7447 GTGGCCTTTGCTGAGGTGCAAGGAACCTTCTTTTCTGGGTCTTTCACATCAATATTCTGG 7506 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||| ||| | || | ||||||||||||| | ||||| ||| | ||| || || Sbjct 7507 CTCAGGAAGCGAGGGCTGATGCCTGGTCTCACATTCTCCAGCGAGCTTATTAGCAGAGAT 7566 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || || ||| | |||||||| ||| || |||| ||| | | |||| | ||| Sbjct 7567 GAGGGCTATCACTGGGACTTTGCCTGCCTGATGTTCAAACA-CCTGTTGTACAAACC--- 7622 Query 102098 TCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | |||| | || | |||||| | | | | || || | || ||| | || || || Sbjct 7623 TTCAGAGCAGAGAGTAAATGAAATAATTATTAATGCGGTTAGGATAGAAGAGGAGTTCCT 7682 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | || |||| || || | | || ||||| |||| ||||||| |||||||| Sbjct 7683 CACCGAGGCCTTGCCAGTGAAGCTCATTGGCATGAATTGCACTTTGATGAAGCAGTACAT 7742 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAGCACTATAATGTTA 102275 | |||| |||| || | || || | || |||| ||| || || | || ||| Sbjct 7743 TCAATTCATGGCTGACAGGCTCCTGCTGGAGTTGGGTTTTAGCAAGGCTTTCCAA-GTTG 7801 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 |||| || |||||||| |||||||| || ||| ||||||||||| ||||| | Sbjct 7802 AAAACCGGTTTGACTTCATGGAGAATATTTCACTGGAGGGGAAGACCAACTTCTTTGAGA 7861 Query 102336 AGAGAGTCGCCGAGTATCA 102354 | || | | ||| ||||| Sbjct 7862 AAAGCGAAGGCGAATATCA 7880 >seq172910 Length=5564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 172/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| |||||||| || || |||||||| Sbjct 3553 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATA 3612 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT-CCACA 94910 || || || | | | | | |||||| || || | |||||| ||| | | || Sbjct 3613 CTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGC-TGAGGGGTGCCGGC 3671 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || || || ||||| |||||||| || || | | || ||||| || | ||||| || Sbjct 3672 GTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTC 3731 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 | ||| | ||| || || ||| || |||| ||||||||| ||||||| ||| Sbjct 3732 CAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTG 3791 Query 95031 AGGGCGCTCAAC 95042 ||||||||| || Sbjct 3792 AGGGCGCTCGAC 3803 >seq39192 Length=20454 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 101922 CCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCA 101981 |||||||||| | ||||||||||||||| ||| | | | ||| || ||| || ||| Sbjct 14156 CCTTTGCTGCCATGGAAGGAATCTTCTTTTCTGGGTCTTCCACATTGATATTCGGGCTCA 14215 Query 101982 AGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAG 102041 |||| | || | ||||||| ||||| | |||||||||| | ||| || || || | Sbjct 14216 AGAAGCGAGGGCTGATGCCTGGCCTCACATTCTCCAATGAGCTTATTAACAGAGATGAGG 14275 Query 102042 GTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 || | || | |||||||| ||| || |||| ||| Sbjct 14276 GT-TGCACTGTGACTTTGCCTGCCTGATGTTCAAA 14309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987334724737955