Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq96587 183 3e-41 seq6383 168 6e-37 seq39192 113 4e-20 seq128274 105 6e-18 >seq96587 Length=11614 Score = 183 bits (202), Expect = 3e-41 Identities = 501/759 (66%), Gaps = 14/759 (2%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 |||| || || ||||| |||| | | |||| || ||| | || ||||| || | Sbjct 3575 GTGATTTGGATTGGATTAGATGTTGGTCTTGTCCT----TAACATATCCCAGTCTTCAAA 3520 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| ||| || | || |||||||| || | | | | || |||| | | | || Sbjct 3519 CCCTGCTTCCTGCCACAGAAGTGCATACTAGTGAATATGCCATAGTTAGGCTCAGCAATG 3460 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 | || ||| || || ||||| | || || || |||| || |||||||| | | | Sbjct 3459 TGGATGTTCAAAGACTGGTTTTGACCAATGAAAGCGCCTCCATCAGCTGCCATCTTGAGA 3400 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035 | | ||| ||||| || ||||| || || ||||| | ||| || | | || | Sbjct 3399 ACAGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAGGTCGTCCAGAGTT 3340 Query 37036 TCTAA-ATGTT--GAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTAT 37090 ||| ||| | ||||||| ||||| ||| || | || ||| || || || | || Sbjct 3339 TCTGGTATGCTCTGAATAGAGCCATTGCATGCAATA--ATCTGATTTTTCATCTCTTCAT 3282 Query 37091 TCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCT 37149 |||||| | | ||| | | || ||||||| || ||| ||||||||||||||||| ||| Sbjct 3281 TCCACA-AGCCCCACTCAGTGAGATCTCTCAGTAAGTGAGGATTTACAACCTGAAATTCT 3223 Query 37150 CCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA-TTATT 37208 || || || |||| | || || || ||||| ||||| | ||||||||||||| ||||| Sbjct 3222 CCTGACAAGGCTCTGCAAGTGTAGATGTTGCTGGTATAAGATTCAATGGACTCACTTATT 3163 Query 37209 ACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAA 37268 | || |||| || || ||| ||||||| || || || || | || ||||| | Sbjct 3162 TTCCAGAATCTGAGCAGTGGAAGCAATAGGCATCGGGGCAATAAGTAAACTGTTTCTTAT 3103 Query 37269 TCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTT 37328 |||| | | ||| ||| || || ||||| ||| ||| ||||| || | | Sbjct 3102 ACCATACTTCTCAATCTTCTCCTTGAGAAATTTCCAGTCCTATAGGTCTGTGGGAGTAAT 3043 Query 37329 TAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATA 37388 |||||||||||| || || || ||||| || ||||||| | || || | ||||| Sbjct 3042 ATTCCACATATCATACTGAAGGATTCCTTTGCTGACTGGAGAGCCCTTGTAGATTTCATA 2983 Query 37389 AGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTC 37448 | || | || | || | || || | ||| | || ||||||| || ||||| Sbjct 2982 CAGGCCATGCTCCTTGGTCAGAACACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTC 2923 Query 37449 GAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATAT 37508 ||| ||||| ||| |||| || || ||| || || || | ||| | || | || Sbjct 2922 GAAGATTTGCTAATTCAATAACTTGGCCTCTGGACTCTCAAAAGGATACCTCATAAGAAT 2863 Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 ||| | || |||| ||| || || || || || ||||| Sbjct 2862 AAAAGCCTCTGCCAGACCTTGTACTCCAATTCCAATGGG 2824 >seq6383 Length=23588 Score = 168 bits (186), Expect = 6e-37 Identities = 479/733 (65%), Gaps = 5/733 (1%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 |||||||||| | |||| || | ||| || | || || || || ||||| ||||||| Sbjct 7239 CACCCCCATCCTCTGATTCTCGCCTACTT-TCTTCTCAAAGAAGTTGGTCTTCCCTTCTA 7297 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| || | |||||| ||| ||| || || | || ||| | || | |||| | Sbjct 7298 GTGAGATGTTCTCCATGAAGTCAAACGGGTTTTCCACTCGGAAAGCCTTGCTAAAACCCA 7357 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | || || || || ||||| || ||||| ||| ||| |||||||| Sbjct 7358 GCTCCAGCAGGAGCCTGTCGGCCACAAATTCAATGTACTGTTTCATCAAAGTACAATTCA 7417 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || | || | ||||||| |||||| |||| |||| Sbjct 7418 TCCCAATGAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCTATCTTAAATGCAT 7477 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 ||||| || | ||| | || || ||| ||| | ||||| ||||| | Sbjct 7478 TGATGATGATTTCCTTTACTTTCTGCTCCGAAGGTTTGTGTGCCAGGTGTTTGAACATCA 7537 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || ||||| ||||| || || || || ||||| || || || || | || ||||| | Sbjct 7538 GGCAGGCAAAGTCACAGTGCAAGCCCTCATCTCTGCTAATAAGCTCGCTGGAGAATGTGA 7597 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 |||||||||| ||||| || || | ||| ||||| | | || || ||||| |||| Sbjct 7598 GGCCGGGCATCAGCCCTCGCTTCTTGAGCCAGAATATCGATGTGAAAGACCCAGAGAAGA 7657 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAG 11804 | ||||| ||||| | ||||| || || || | |||||||| ||| ||| Sbjct 7658 AGATTCCTTCCACCTCAGCAAACGCCACCACGCGCTCTCCATAGGTGGCCTCTTTGTCCC 7717 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||||| |||||| || || ||||| || || || ||| | || || || | Sbjct 7718 CAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCTTCTCGATGGCAT 7777 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 | || | | | ||| | ||| | | || || || || | | || |||| Sbjct 7778 TGAAGAGGAACTCCCTCTCTTTGGGGTCTTTGATGTAAGTGTCGATGAGGAGGCTGTACA 7837 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| || |||||||| || || || || |||||||| || || || |||| Sbjct 7838 TCTCAGAATGTATGTTTTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCTTCTGTGA 7897 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || ||| || | ||| | || || ||||| || || ||||| || | || Sbjct 7898 TCTGAACTTCCTGGCTGAACCGCTCCACCAAGTTTTCATTCACGATGCCATCGCTGGCTG 7957 Query 12045 CAAAAAATGCTAG 12057 |||| || || || Sbjct 7958 CAAAGAACGCCAG 7970 >seq39192 Length=20454 Score = 113 bits (124), Expect = 4e-20 Identities = 314/475 (66%), Gaps = 19/475 (4%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCG--TTCGAAAAAA------TTAGTCTTA 11380 ||| |||||| | ||||| |||| |||| || ||| || ||| || ||||| Sbjct 14605 CACTCCCATCCTCTGATACTCACCTACTCTTCTCTTTCAAACAAAAGGATGTTTGTCTTC 14546 Query 11381 CCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCA 11440 | ||| ||||| | | ||||| ||| ||| || || || || | ||| | || | | Sbjct 14545 CTTTCCAGTGAAGTGTTTTCCATGAAGTCAAATGGGTTTTAGACTTGGAAAGCCTTGTTA 14486 Query 11441 CAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAA 11500 ||||| | ||| | | || | || || ||||| || ||||| || ||| | Sbjct 14485 CAACCCAGCTCCAGCAGGAGCCTGTTGGCCACAAATTCAATGTACTGCTTCACCAAAGTA 14426 Query 11501 CAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTA 11560 |||||||| || | || | ||| || | || |||| | |||| || || ||| || Sbjct 14425 CAATTCATCCCATTGAGCTTCACTGGCAAGGCCTCTGTGAGGAACTTCTGTTTTATCCTA 14366 Query 11561 ACCGCATC---AATGATT--ATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAAT 11615 ||| ||| ||||||| || || | | | ||| | ||| | | |||| | | Sbjct 14365 ACCACATTGATAATGATTTCATTTACTCTCTGA--TCC--AAATGTTTG-TGTAGCAGGT 14311 Query 11616 GTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCAT 11675 |||| ||||| | || ||||| ||||| || || ||| | ||||| | || || |||| Sbjct 14310 GTTTGAACATCAGGCAGGCAAAGTCACAGTGCAACCCT-CATCTCTGTTAATAAGCTCAT 14252 Query 11676 TAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG 11735 | || ||||| | || ||||||| ||||| || || | || ||||| | | | Sbjct 14251 TGGAGAATGTGAGGCCAGGCATCAGCCCTCGCTTCTTGAGCCCGAATATCAATGTGGAAG 14192 Query 11736 AACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 | ||||||||||| ||||| |||| || ||||| | || || | |||||||| Sbjct 14191 ACCCAGAAAAGAAGATTCCTTCCATGGCAGCAAAGGTCACCACACGATCTCCATA 14137 >seq128274 Length=19531 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 12373 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 12314 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 12313 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 12254 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 12253 CTGTTTCTTATACCAT 12238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467485840399440