Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq96587 183 3e-41
seq6383 168 6e-37
seq39192 113 4e-20
seq128274 105 6e-18
>seq96587
Length=11614
Score = 183 bits (202), Expect = 3e-41
Identities = 501/759 (66%), Gaps = 14/759 (2%)
Strand=Plus/Minus
Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855
|||| || || ||||| |||| | | |||| || ||| | || ||||| || |
Sbjct 3575 GTGATTTGGATTGGATTAGATGTTGGTCTTGTCCT----TAACATATCCCAGTCTTCAAA 3520
Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915
||| ||| || | || |||||||| || | | | | || |||| | | | ||
Sbjct 3519 CCCTGCTTCCTGCCACAGAAGTGCATACTAGTGAATATGCCATAGTTAGGCTCAGCAATG 3460
Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975
| || ||| || || ||||| | || || || |||| || |||||||| | | |
Sbjct 3459 TGGATGTTCAAAGACTGGTTTTGACCAATGAAAGCGCCTCCATCAGCTGCCATCTTGAGA 3400
Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035
| | ||| ||||| || ||||| || || ||||| | ||| || | | || |
Sbjct 3399 ACAGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAGGTCGTCCAGAGTT 3340
Query 37036 TCTAA-ATGTT--GAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTAT 37090
||| ||| | ||||||| ||||| ||| || | || ||| || || || | ||
Sbjct 3339 TCTGGTATGCTCTGAATAGAGCCATTGCATGCAATA--ATCTGATTTTTCATCTCTTCAT 3282
Query 37091 TCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCT 37149
|||||| | | ||| | | || ||||||| || ||| ||||||||||||||||| |||
Sbjct 3281 TCCACA-AGCCCCACTCAGTGAGATCTCTCAGTAAGTGAGGATTTACAACCTGAAATTCT 3223
Query 37150 CCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA-TTATT 37208
|| || || |||| | || || || ||||| ||||| | ||||||||||||| |||||
Sbjct 3222 CCTGACAAGGCTCTGCAAGTGTAGATGTTGCTGGTATAAGATTCAATGGACTCACTTATT 3163
Query 37209 ACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAA 37268
| || |||| || || ||| ||||||| || || || || | || ||||| |
Sbjct 3162 TTCCAGAATCTGAGCAGTGGAAGCAATAGGCATCGGGGCAATAAGTAAACTGTTTCTTAT 3103
Query 37269 TCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTT 37328
|||| | | ||| ||| || || ||||| ||| ||| ||||| || | |
Sbjct 3102 ACCATACTTCTCAATCTTCTCCTTGAGAAATTTCCAGTCCTATAGGTCTGTGGGAGTAAT 3043
Query 37329 TAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATA 37388
|||||||||||| || || || ||||| || ||||||| | || || | |||||
Sbjct 3042 ATTCCACATATCATACTGAAGGATTCCTTTGCTGACTGGAGAGCCCTTGTAGATTTCATA 2983
Query 37389 AGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTC 37448
| || | || | || | || || | ||| | || ||||||| || |||||
Sbjct 2982 CAGGCCATGCTCCTTGGTCAGAACACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTC 2923
Query 37449 GAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATAT 37508
||| ||||| ||| |||| || || ||| || || || | ||| | || | ||
Sbjct 2922 GAAGATTTGCTAATTCAATAACTTGGCCTCTGGACTCTCAAAAGGATACCTCATAAGAAT 2863
Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547
||| | || |||| ||| || || || || || |||||
Sbjct 2862 AAAAGCCTCTGCCAGACCTTGTACTCCAATTCCAATGGG 2824
>seq6383
Length=23588
Score = 168 bits (186), Expect = 6e-37
Identities = 479/733 (65%), Gaps = 5/733 (1%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
|||||||||| | |||| || | ||| || | || || || || ||||| |||||||
Sbjct 7239 CACCCCCATCCTCTGATTCTCGCCTACTT-TCTTCTCAAAGAAGTTGGTCTTCCCTTCTA 7297
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|||| || | |||||| ||| ||| || || | || ||| | || | |||| |
Sbjct 7298 GTGAGATGTTCTCCATGAAGTCAAACGGGTTTTCCACTCGGAAAGCCTTGCTAAAACCCA 7357
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
||| | | || || || || ||||| || ||||| ||| ||| ||||||||
Sbjct 7358 GCTCCAGCAGGAGCCTGTCGGCCACAAATTCAATGTACTGTTTCATCAAAGTACAATTCA 7417
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | ||| || | || | || | ||||||| |||||| |||| ||||
Sbjct 7418 TCCCAATGAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCTATCTTAAATGCAT 7477
Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627
||||| || | ||| | || || ||| ||| | ||||| ||||| |
Sbjct 7478 TGATGATGATTTCCTTTACTTTCTGCTCCGAAGGTTTGTGTGCCAGGTGTTTGAACATCA 7537
Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687
|| ||||| ||||| || || || || ||||| || || || || | || ||||| |
Sbjct 7538 GGCAGGCAAAGTCACAGTGCAAGCCCTCATCTCTGCTAATAAGCTCGCTGGAGAATGTGA 7597
Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747
|||||||||| ||||| || || | ||| ||||| | | || || ||||| ||||
Sbjct 7598 GGCCGGGCATCAGCCCTCGCTTCTTGAGCCAGAATATCGATGTGAAAGACCCAGAGAAGA 7657
Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAG 11804
| ||||| ||||| | ||||| || || || | |||||||| ||| |||
Sbjct 7658 AGATTCCTTCCACCTCAGCAAACGCCACCACGCGCTCTCCATAGGTGGCCTCTTTGTCCC 7717
Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864
||||| |||||| || || ||||| || || || ||| | || || || |
Sbjct 7718 CAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCTTCTCGATGGCAT 7777
Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924
| || | | | ||| | ||| | | || || || || | | || ||||
Sbjct 7778 TGAAGAGGAACTCCCTCTCTTTGGGGTCTTTGATGTAAGTGTCGATGAGGAGGCTGTACA 7837
Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984
| || ||||| || |||||||| || || || || |||||||| || || || ||||
Sbjct 7838 TCTCAGAATGTATGTTTTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCTTCTGTGA 7897
Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044
||| || ||| || | ||| | || || ||||| || || ||||| || | ||
Sbjct 7898 TCTGAACTTCCTGGCTGAACCGCTCCACCAAGTTTTCATTCACGATGCCATCGCTGGCTG 7957
Query 12045 CAAAAAATGCTAG 12057
|||| || || ||
Sbjct 7958 CAAAGAACGCCAG 7970
>seq39192
Length=20454
Score = 113 bits (124), Expect = 4e-20
Identities = 314/475 (66%), Gaps = 19/475 (4%)
Strand=Plus/Minus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCG--TTCGAAAAAA------TTAGTCTTA 11380
||| |||||| | ||||| |||| |||| || ||| || ||| || |||||
Sbjct 14605 CACTCCCATCCTCTGATACTCACCTACTCTTCTCTTTCAAACAAAAGGATGTTTGTCTTC 14546
Query 11381 CCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCA 11440
| ||| ||||| | | ||||| ||| ||| || || || || | ||| | || | |
Sbjct 14545 CTTTCCAGTGAAGTGTTTTCCATGAAGTCAAATGGGTTTTAGACTTGGAAAGCCTTGTTA 14486
Query 11441 CAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAA 11500
||||| | ||| | | || | || || ||||| || ||||| || ||| |
Sbjct 14485 CAACCCAGCTCCAGCAGGAGCCTGTTGGCCACAAATTCAATGTACTGCTTCACCAAAGTA 14426
Query 11501 CAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTA 11560
|||||||| || | || | ||| || | || |||| | |||| || || ||| ||
Sbjct 14425 CAATTCATCCCATTGAGCTTCACTGGCAAGGCCTCTGTGAGGAACTTCTGTTTTATCCTA 14366
Query 11561 ACCGCATC---AATGATT--ATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAAT 11615
||| ||| ||||||| || || | | | ||| | ||| | | |||| | |
Sbjct 14365 ACCACATTGATAATGATTTCATTTACTCTCTGA--TCC--AAATGTTTG-TGTAGCAGGT 14311
Query 11616 GTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCAT 11675
|||| ||||| | || ||||| ||||| || || ||| | ||||| | || || ||||
Sbjct 14310 GTTTGAACATCAGGCAGGCAAAGTCACAGTGCAACCCT-CATCTCTGTTAATAAGCTCAT 14252
Query 11676 TAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG 11735
| || ||||| | || ||||||| ||||| || || | || ||||| | | |
Sbjct 14251 TGGAGAATGTGAGGCCAGGCATCAGCCCTCGCTTCTTGAGCCCGAATATCAATGTGGAAG 14192
Query 11736 AACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790
| ||||||||||| ||||| |||| || ||||| | || || | ||||||||
Sbjct 14191 ACCCAGAAAAGAAGATTCCTTCCATGGCAGCAAAGGTCACCACACGATCTCCATA 14137
>seq128274
Length=19531
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| ||||| |||||||||
Sbjct 12373 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 12314
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 12313 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 12254
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 12253 CTGTTTCTTATACCAT 12238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467485840399440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |