Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq18562 232 6e-56 seq145711 147 2e-30 seq161904 98.7 8e-16 >seq18562 Length=18598 Score = 232 bits (256), Expect = 6e-56 Identities = 439/643 (68%), Gaps = 11/643 (2%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||||||| || || ||||| ||||| |||||||| || || | |||||| ||| ||| Sbjct 12822 GTAAACGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTG 12763 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| | || || |||| |||||||| |||||| || || | || |||||||| Sbjct 12762 TGCGATCATGTGGGTGAGCAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCAT 12703 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--------CCGAGCCACGTAA 21116 ||| || ||||||||||| |||||||||||||||||||| | || |||||| Sbjct 12702 GTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAG 12643 Query 21117 AACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCAC 21176 ||||| || | | || || ||||| || ||||| | || || || ||||| Sbjct 12642 AACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAAAGGAAGATCTTTTGGATTCCAA 12583 Query 21177 GCGCACATAACGATGCGCCGATC-GTGGGGCCGCCTGTTAATTAGATCCACCACGTAACG 21235 || |||| || ||| | | || || || | | || || | || | ||| | | Sbjct 12582 GCACACAGAATGATTCTTCTGTCAGTAGGTTTG-GTTTTGATCATGTCAATCACCTTTTG 12524 Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295 ||| ||| |||| || ||||| || | | || |||| || |||||||| Sbjct 12523 CAGTTGGCCCACTCCTTGACCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAA 12464 Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCC 21355 ||| |||||||| || || || || || || | ||| ||||| | | ||| || Sbjct 12463 ATGCCTCCACTGAAAGCC-TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCC 12405 Query 21356 CTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGA 21415 | | ||| ||| | || ||||| | || ||||| ||||| || || | | || Sbjct 12404 AAGGCCATCCAGGAAGTCACGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGA 12345 Query 21416 CAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCT 21475 |||||| | | | ||||| || ||||||||||||||| |||||||| | ||| | Sbjct 12344 CAGTTCTTTAGCATTTGTGGATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTT 12285 Query 21476 CCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTG 21535 ||| ||||| | |||||| || | ||||||||| || || || ||| | || | ||| | Sbjct 12284 CCAGAACACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCTCGCCCG 12225 Query 21536 AAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCC 21578 | | |||||| ||| |||||| ||| || | ||| ||| Sbjct 12224 CACGCTGAACACCGACAGGGTGCCGGTGCCTGTGCGGTCATCC 12182 >seq145711 Length=17273 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 |||||||||| ||| ||||||| || || || |||| ||||||||||||||| || || Sbjct 11195 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 11254 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct 11255 ACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCACC 11314 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||| ||||| || | | || || ||||| || ||||| Sbjct 11315 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCAT 11355 >seq161904 Length=2185 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| ||||| |||| |||||||| || || || | |||||| || | || || | Sbjct 1402 GTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCCAGGCCGGTCGCCTGCGCAAC 1343 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || || ||||| || || |||||||||||||| ||||| || |||||| |||||| | Sbjct 1342 CATATGGGTCAGCAGCGCATAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 1283 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAG-CTCCCCCCGAGCCACGTAAAACTGACACAAAA 21129 | | |||||||| |||||| || || || || |||||||| ||||| ||| Sbjct 1282 GCTGCGCTGGTACAACTGGCAACTGAGCCTGCCATCG-GCCACGTAGAACTGGAACAGGT 1224 Query 21130 CGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGC 21180 ||| || || || |||||| ||| ||| || | |||||| |||| Sbjct 1223 TGTGGCAGGGCATCAGCGCCATCTGCGAGAGCTCGCCCACGTTCCAGGCGC 1173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426851116338480