Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq87209 105 2e-18 >seq87209 Length=1003 Score = 105 bits (116), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 12/245 (5%) Strand=Plus/Minus Query 9882 CAGGAAAGGTCGGACAGCTCATCCGATTCGATTAGGTCGATCGCGTGACCGTCCCACACG 9941 ||||| || | | |||||| |||||| ||| ||||||||| || |||||| || Sbjct 337 CAGGACAGCCCCGCCAGCTCCCCCGATTGGATGTAGTCGATCGCCTGCTTGTCCCAGACC 278 Query 9942 AGCAGGTCGCCGCGCAGGTGTTTGCCGT---CGAACCGCACGTTGTGTACCGAACCGCCG 9998 |||||||| ||| ||| ||||||| | |||| || | ||| || ||||||| Sbjct 277 AGCAGGTC--CGC-CAGCAGTTTGCCATTTTCGAAACGGGCATTGCCGACGCTACCGCCG 221 Query 9999 ACGTACTCTTTGCGCGGGTTGTCGGCCGTCTGCGCGACGTGCTTGATCATGAGGGGCAGC 10058 | ||| || |||||||| | |||||||||||| |||| |||| ||||| | || || Sbjct 220 ATGTATTCCTTGCGCGGTTCGTCGGCCGTCTGGGCGATGTGCCGAATCATCAACGGTAGA 161 Query 10059 CCCTCGAACGACTTCAGCGTGTCGGGATGCCCGAGCTCGGTCGGATCGCGGTACAGGTCG 10118 || | ||| | || ||| || | | | ||||||| || |||||||| ||||| Sbjct 160 CCGTTGAAGG---TCGGCGCAGCGCGTT---CAAGCTCGGCGGGGTCGCGGTAGAGGTCA 107 Query 10119 TAGAC 10123 ||||| Sbjct 106 TAGAC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153943811657258