Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6383 237 1e-57 seq39192 129 5e-25 seq32390 89.7 4e-13 >seq6383 Length=23588 Score = 237 bits (262), Expect = 1e-57 Identities = 587/885 (66%), Gaps = 8/885 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | |||| |||| ||| | || ||||| ||||| || || ||| Sbjct 7234 GACATCACCCCCATCCTCTGATTCTCGCCTACTTTCTTCTCAAAGAAGTTGGTCTTCCCT 7293 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACA-ATAGTATTTTTTACA 12963 |||| || || || ||||| || || || || |||| | | | || || | | | Sbjct 7294 TCTAGTGAGATGTTCTCCATGAAGTCAAACGGGTTTTCCACTCGGAAAGCCTTGCTAAAA 7353 Query 12964 CCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 ||| | || || | | ||||| || ||||| || |||||||||||||| ||| ||| Sbjct 7354 CCC-AGCTCCAGCAGGAGCCTGTCGGCCACAAATTCAATGTACTGTTTCATCAAAGTACA 7412 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 ||||| || || | || || |||| || || || | || | | |||||| | || Sbjct 7413 ATTCATCCCAATGAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCTATCTTAAA 7472 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT---TGATAGATGCTT 13140 ||| | ||| | || || ||| ||| |||| | ||| || || || || || Sbjct 7473 TGCATTGATGATGATTTC-CTT--TACTTTCTGCTCCGAAGGTTTGTGTGCCAGGTGTTT 7529 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| || ||||| ||||||||||| || |||||||| || || |||||| | || Sbjct 7530 GAACATCAGGCAGGCAAAGTCACAGTGCAAGCCCTCATCTCTGCTAATAAGCTCGCTGGA 7589 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 ||||| || || ||||| |||||||| || || | ||| ||||| | | || || || Sbjct 7590 GAATGTGAGGCCGGGCATCAGCCCTCGCTTCTTGAGCCAGAATATCGATGTGAAAGACCC 7649 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 || || || |||||||| || | |||||||| | || | || ||||| || | Sbjct 7650 AGAGAAGAAGATTCCTTCCACCTCAGCAAACGCCACCACGCGCTCTCCATAGGTGGCCTC 7709 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| | | ||||| |||||||| ||| || | || || || ||| || || Sbjct 7710 TTTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCTTCTC 7769 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || || || || | | | | || || |||| || ||||| || || | | Sbjct 7770 GATGGCATTGAAGAGGAACTCCCTCTCTTTGGGGTCTTTGATGTAAGTGTCGATGAGGAG 7829 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||| ||||| || ||||| || |||||||| || || ||||| ||||| || || | || Sbjct 7830 GCTGTACATCTCAGAATGTATGTTTTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGC 7889 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| | ||||||||| | || | || | |||||||| || || || || || Sbjct 7890 TTCTGTGATCTGAACTTCCTGGCTGAACCGCTCCACCAAGTTTTCATTCACGATGCCATC 7949 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT 13620 || || ||||| || || || | |||| ||| || | | |||| || || | Sbjct 7950 GCTGGCTGCAAAGAACGCCAGGACGTGCGAAATGAAGTACCTCTCGTCGTCCTTCAGGGT 8009 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 ||| | | | || || || | || |||||||| | ||||| || ||||| | Sbjct 8010 CTCCCAGTGCAGCAGGTCCTTGGAAAGGTCCACCTCCTCCGCTGTCCAGAAGGAAGCCTC 8069 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 |||||||| |||||| ||| || || | || | ||||| || Sbjct 8070 GGCCTTCTTGTACATCTGCCAGATGTCGTGGTACTCGATGGGGAA 8114 >seq39192 Length=20454 Score = 129 bits (142), Expect = 5e-25 Identities = 486/757 (64%), Gaps = 23/757 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTT--TTCAAAAAA------GTTTG 12896 ||||| || ||| | ||||| || | |||||| | |||||| || ||||| Sbjct 14610 GACATCACTCCCATCCTCTGATACTCACCTACTCTTCTCTTTCAAACAAAAGGATGTTTG 14551 Query 12897 TTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT- 12955 | || | ||| | ||| | |||||||| || || || || |||| | | | | | Sbjct 14550 TCTTCCTTTCCAGTGAAGTGTTTTCCATGAAGTCAAATGGGTTTT----AGACTTGGAAA 14495 Query 12956 ---TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTC 13012 || ||||| || | || || | | |||| || ||||| || |||||||| ||| Sbjct 14494 GCCTTGTTACAACCCAGCTCCAGCAGGAGCCTGTTGGCCACAAATTCAATGTACTGCTTC 14435 Query 13013 ATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttt 13072 | ||| ||| ||||| || | | || || |||| || ||||| | || || | | Sbjct 14434 ACCAAAGTACAATTCATCCCATTGAGCTTCACTGGCAAGGCCTCTGTGAGGAACTTCTGT 14375 Query 13073 tCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT 13132 | ||| ||| | | ||||| || || ||| | | || || | | | Sbjct 14374 TTTATCCTAACCACATTGATAATGATTTCATTTACTCTCTGATCCAAATGTTTGTGTAGC 14315 Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || || || ||||||| || ||||| ||||||||||| || |||||||| | || ||| Sbjct 14314 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGCAA-CCCTCATCTCTGTTAATAAGC 14256 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || || ||||| || || ||||| |||||||| || || | || ||||| | Sbjct 14255 TCATTGGAGAATGTGAGGCCAGGCATCAGCCCTCGCTTCTTGAGCCCGAATATCAATGTG 14196 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 | || || ||||| || |||||||| | || ||||| | | || | || ||||| Sbjct 14195 GAAGACCCAGAAAAGAAGATTCCTTCCATGGCAGCAAAGGTCACCACACGATCTCCATAG 14136 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTG-CTTTTTGTTTAACGCAGTT 13371 | | ||| | | ||||| ||| |||| || ||| ||| || || Sbjct 14135 GGGGCCTCTTTGTCCCCAATCCAACGCAAGGCTCAGTCTGTCTTCTTG----ACACAAGG 14080 Query 13372 CATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGT-CTAAAATATAAGTAT 13430 ||| |||| || |||| || | | | | | ||| || || ||| ||||| | Sbjct 14079 CATCATTTCAATGACGTTGAAGAGGCACTCCCTCTTCTTGGGGTCCTTGAATGTAAGTGT 14020 Query 13431 CTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA 13490 |||| | |||||||||| || ||||| || |||||||| || | ||||| || || | Sbjct 14019 CTATGAGGAAGCTATACACCTCAGAATGTATGTTTTCCATGGCAACCTGGAAGCCGTAGA 13960 Query 13491 AACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAA 13550 | || | || | || | ||||||||| | ||| | || | |||||| | || | Sbjct 13959 AGCAGCAGGCTTTTGTGATCTGAACTTCCTGGCTAAACCGCTCCACCAAGTTTGCATTCA 13900 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 || || ||||| | ||||| || || || | ||| Sbjct 13899 TGATGCCATCACTCACTGCAAAGAACGCCAGGACGTG 13863 >seq32390 Length=18494 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || Sbjct 4245 AATAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATG 4186 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAA 13065 | || |||| |||||||||||||| Sbjct 4185 AGGCCAACTGGCAAGGCTTCTGTTAAAAA 4157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 8431 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 8372 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 8371 ATAAAATCAAAGGGATTTT 8353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430050583862202