Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq15915 87.8 9e-13 seq103819 86.0 3e-12 seq7689 86.0 3e-12 seq61101 84.2 1e-11 seq76065 82.4 4e-11 seq33823 82.4 4e-11 >seq15915 Length=1121 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | ||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 176 AAAAAGCGAATGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 235 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||||||||||||| ||||| Sbjct 236 GCTCTAACCAACTGAGCTAACCGGCCG 262 >seq103819 Length=16670 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 13774 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 13715 Query 11515 CTGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 13714 CTGAGCTAACCGGCCG 13699 >seq7689 Length=8334 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 1784 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1843 Query 11515 CTGAGCTAATGGGCCGTCG 11533 ||||||||| ||||| || Sbjct 1844 CTGAGCTAACCGGCCGGCG 1862 >seq61101 Length=20802 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 12817 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 12758 Query 11528 CCG 11530 ||| Sbjct 12757 CCG 12755 >seq76065 Length=15376 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11703 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11644 Query 11528 CC 11529 || Sbjct 11643 CC 11642 >seq33823 Length=24245 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 13876 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 13817 Query 11528 CC 11529 || Sbjct 13816 CC 13815 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260925836495476