Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq79216 109 4e-19
seq161317 104 2e-17
seq548 93.3 3e-14
seq8818 89.7 4e-13
seq97981 87.8 1e-12
>seq79216
Length=33065
Score = 109 bits (120), Expect = 4e-19
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 3635 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3694
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || |||| || ||||| ||| | || |||| ||| ||||| ||
Sbjct 3695 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3754
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || || || || || ||| ||||| | | | ||||||| |||||||
Sbjct 3755 ATGCCTTCCTTATCTTGGATCTTGGCT--TTCACATTCTCAATGGTGTCGCTGGGCTCCA 3812
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||||||| || || ||||| || || ||||| ||||||||||||
Sbjct 3813 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTTG 3865
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 3407 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3466
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| || ||||| ||| | || |||| ||| ||||| ||
Sbjct 3467 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 3526
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| ||||| || || || || |||||| | | | ||||||| ||||||
Sbjct 3527 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTCGGCTCCA 3584
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || |||||||| || || || || ||||||||
Sbjct 3585 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3633
>seq161317
Length=2104
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||| | ||| | || ||||| ||
Sbjct 1102 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCTTCCAACTGC 1161
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || || | ||||| |||||||| || || | ||||| ||||| ||| |||
Sbjct 1162 TTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 1221
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
|| |||||| | | | | |||||| | || ||| || | ||||||||| ||||||||
Sbjct 1222 CT-CTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 1280
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||||||||||||
Sbjct 1281 GAGAGTCTTCACAAAAATCTGCAT 1304
>seq548
Length=19863
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || ||||||||||| | | || | | |||
Sbjct 10967 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTGCAGCCATCC 10908
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| ||||||||| || | || || | ||| ||||| || | |||||| |||||
Sbjct 10907 TCCAGCTGTTTGCCCACAAACATCAGTCACTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 10848
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | ||||| | |||||| || | ||||||||
Sbjct 10847 TGGATTTTAGCT--TTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 10790
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || ||||| ||||||||
Sbjct 10789 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10756
>seq8818
Length=48227
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGA----CTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779
|| |||| ||||||||||| ||| || || ||||||||||| | | || | |
Sbjct 8716 AGCACCAAGTGCAGCGTGGAGGGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTGCGGCC 8775
Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839
||||||| ||||||||||| |||| || ||||| ||||| || | |||||| ||
Sbjct 8776 ATCCTCCAGCCGTTTGCCCGCAAAAATCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTT 8835
Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897
||| || || ||| || || | | ||||| | |||||| || | ||||
Sbjct 8836 GTCTTGGATTTTAGCT--TTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTG 8893
Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937
||||| || | ||||| || || ||||| ||||||||||
Sbjct 8894 ATGGTCTTGCTAGTCAGGGTCTTCACAAAGATCTGCATTT 8933
>seq97981
Length=9611
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || ||||||||||| | | || | | ||
Sbjct 2484 AGCACCAACTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTATAATCATCT 2543
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||| ||| ||| || ||||| ||||| ||| | |||||| |||||
Sbjct 2544 TCCAGCTGTTTGCCTGCAAAAACCAGACGCTGCTGGTCAGAAGGGATGCCCTCCTTGTCT 2603
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | ||||| | |||||| || | ||||||||
Sbjct 2604 TGGATTTTAGCT--TTGACAATCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2661
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || |||| ||||||||
Sbjct 2662 TCTTGCCAGTCAGGGTCTTTGCAAAGATCTGCAT 2695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404212169488990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |