Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq132890 446 4e-121 seq176772 208 2e-49 >seq132890 Length=11277 Score = 446 bits (494), Expect = 4e-121 Identities = 385/479 (80%), Gaps = 3/479 (1%) Strand=Plus/Minus Query 28050 GCCCCGATCCCCTCTGGCTGGGTCCAGACCGGCGAGCGCTGGGCGCTTTGGTACAACGGC 28109 |||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| |||||| Sbjct 7861 GCCCCGATGCCCTCTGGCTGGGTCCAGACCGGTGAGTGCTGGGCGCTCTGGTAAAACGGC 7802 Query 28110 CGCGAGACGGCCAGCGTTACACCCGACGGCGGTCCTGGGGTCCGGCTATGGATGGAAGGC 28169 || ||||| ||||||| | | |||| || ||| | || || || || |||||||||||| Sbjct 7801 CGAGAGACAGCCAGCGCTGCTTCCGATGGTGGTGCCGGCGTGCGCCTGTGGATGGAAGGC 7742 Query 28170 CAGAAGATGTGGCAGGTGAAGGAAGTGCGCGCGGCCAACGTCCGGCAGGCGAAGCGGTAC 28229 |||||||||||||| |||||| ||||||||||||| | ||||||||||||||| ||||| Sbjct 7741 CAGAAGATGTGGCAAGTGAAGAAAGTGCGCGCGGCGAGCGTCCGGCAGGCGAAACGGTAT 7682 Query 28230 GCCGAGCGCTGGTGTGCGGCCAGGCTCTATCCCGATCTGCCACTGCGCCAGGCAGTCGCC 28289 ||||||||||||| ||||||||||| ||||||| || || |||||| |||| |||||| Sbjct 7681 TCCGAGCGCTGGTGCGCGGCCAGGCTACATCCCGACCTTCCCCTGCGCGAGGCCGTCGCC 7622 Query 28290 CGGCTGACCGACAGCACCCCGATCCAGCCCGAGCCGCCGCTGNNNNNNNNNNNNNCGACC 28349 |||||||| |||||||||||||||| || |||||| ||| | || Sbjct 7621 CGGCTGACGGACAGCACCCCGATCCGGCTGCCGCCGCCACTGTCCGGCCTGCCGCCAACG 7562 Query 28350 CGCGAGCAGCAGCAACAGGCCCGGCGTCTGACCGAGGCTGGGGCGAAGGAGGTCGAGCGG 28409 || | ||||||||||||||| ||||| || | ||| |||||||| ||| | ||| Sbjct 7561 CGTGCGCAGCAGCAACAGGCGCGGCGCCTCGCTGAGTCTGGGGCGCTGGATCTGACACGG 7502 Query 28410 ATCAAGGCGGCGCTTGAACCGCGCAAGCCGCCGGCAGAGACGAAACCCCGAGCGAGGGAC 28469 ||||||| ||||| || ||||||||||||||||||||||| || ||| | |||||||| Sbjct 7501 ATCAAGGAAGCGCTGGAGCCGCGCAAGCCGCCGGCAGAGACCAAGCCCAGGGCGAGGGA- 7443 Query 28470 GTCCGCACCAAGGCGTGGGTGAGGGCAGGGCTGCAGCAGATGCGGCGGGGCGTTTAGGC 28528 ||| || |||||| |||| ||||| | |||||||||| | |||| ||| ||||| || Sbjct 7442 -TCCTCA-GAAGGCGCGGGTTAGGGCGGCGCTGCAGCAGCTACGGCAGGGTGTTTAAGC 7386 >seq176772 Length=12769 Score = 208 bits (230), Expect = 2e-49 Identities = 266/358 (74%), Gaps = 9/358 (3%) Strand=Plus/Plus Query 29560 ACATCCGGGTACAGGCCGATCGAAAGCAGCTTCTCCTTGCCGGCGATGCGGTACTTCCAG 29619 || || || |||||||| | || || | ||||||||| || ||| || ||||||||| Sbjct 11476 ACCTCGGGATACAGGCCCAGCGCCAGGACCTTCTCCTTCCCCCCGAAACG-TACTTCCAG 11534 Query 29620 CGCCAGCTGCGCGCACCGGTCGGGGTGAGATAGAGGTACAGGCCGCCACCGTCGGTGATC 29679 |||||||| || ||| | ||||| |||||||||||||||||| |||||| | | Sbjct 11535 CGCCAGCTCTTGGCGTCGGCCACGGTGACGTAGAGGTACAGGCCGCCAGCGTCGGACAGC 11594 Query 29680 TTCTGCGGTTTGTCGCTGGGCTTGGCGCGCCTGATGGCTGCGTCGGTCAGAGGCATTGGG 29739 |||||||| |||||| ||||| ||||| | ||| || ||||||||| |||| |||| Sbjct 11595 TTCTGCGGCTTGTCGGCTGGCTTCGCGCGGCGGATCGCGAGGTCGGTCAGGGGCA-TGGG 11653 Query 29740 GGTATCG--CTTCAGTGGGTGCGGTCGGATACCCCTTGATATACCCCCACCGTCTCATGG 29797 ||||||| || |||| ||||| ||||||||| ||| ||||||||||||||||| | Sbjct 11654 GGTATCGGCTTTTCGTGG--GCGGTGCGATACCCCTAGATGTACCCCCACCGTCTCATAG 11711 Query 29798 ATTGAAACGGATTGCCCCGGTCTGCTGCGGACAATAAAAAAGCCCGGAAACCCTTGTGAT 29857 || |||||| | | || | | ||||| || |||||| |||||| ||||||| Sbjct 11712 CCTGCAACGGAACGGCATGGACCGACGCGGAAAACGAAAAAG-CCGGAACCCCTTGTTTG 11770 Query 29858 GCGGGGGTTTCTGGGCTTCTC-CGGTCCTTGACGAACCGTTCGTTGGTGGAGGTGGGC 29914 || ||| ||| ||||| || || || | ||| ||| ||||||||||||||| Sbjct 11771 ACGAGGGATTC-CGGCTTTTCGTGGACCCTTACGGACCCGGTATTGGTGGAGGTGGGC 11827 Score = 104 bits (114), Expect = 6e-18 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 29829 CAATAAAAAAGCCCGGAAA--CCCTTGTGATGCGGGGGTTTCTGGGCTTCTCCGGTCCTT 29886 ||||||||||||||||| | ||||| || ||||| | || ||||||||||||||||| Sbjct 3645 CAATAAAAAAGCCCGGAGATCCCCTTCTG--GCGGGAATGTCCGGGCTTCTCCGGTCCTT 3702 Query 29887 GACGAACCGTTCGTTGGTGGAGGTGGGCCCTACCG 29921 || | |||| |||||||||||||||||| |||||| Sbjct 3703 GAAGGACCGCTCGTTGGTGGAGGTGGGCGCTACCG 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128525471911738