Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq18562 273 2e-68 seq145711 138 9e-28 seq95250 87.8 1e-12 >seq18562 Length=18598 Score = 273 bits (302), Expect = 2e-68 Identities = 445/632 (70%), Gaps = 18/632 (3%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||||||| ||| || || | || ||||| ||| |||||||| || |||| |||||| Sbjct 12877 GGAAAGG-TCTTGGTTCTCACTGAAGCTGCAGT-TTCAGCGGCTCAGTATGATTCAGGTA 12820 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 ||||| || ||||||| ||||| ||||| || || || | ||| || ||| ||| || Sbjct 12819 AACGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGC 12760 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 ||||||| ||||| || |||||||||| |||||| |||||| | || || |||||||| Sbjct 12759 GATCATGTGGGTGAGCAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTC 12700 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT------CG--CTCACGTAAAAC 29997 | ||||||||||| ||||| || || ||||| || | || |||||| ||| Sbjct 12699 TGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAGAAC 12640 Query 29998 TGACACATGGTGTGGCACGGAGGAAGAGCCATG--AGGCCCAAG-TCTTTGGGGTTCCAG 30054 || || | || ||||| ||||| || |||||| ||| ||| ||||| || ||||| Sbjct 12639 TGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAAAGG---AAGATCTTTTGGATTCCAA 12583 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114 || |||| ||||| | ||||| || ||| | |||| | ||| | | |||||| Sbjct 12582 GCACACAGAATGATTCTTCTGTCAGTAGGTTTGGTTTTGATCATGTCAATCACCTTTTGC 12523 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || || |||| || || || || |||| ||| | |||| ||||| || ||| Sbjct 12522 AGTTGGCCCACTCCTTGACCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAAA 12463 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 ||||||||||| || || || || || || | || ||||||| ||| ||| || Sbjct 12462 TGCCTCCACTGAAAGCC-TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCCA 12404 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 |||| ||||| | || || ||||| |||||||| || || ||| | || Sbjct 12403 AGGCCATCCAGGAAGTCACGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGAC 12344 Query 30295 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30354 || ||||| | |||||||| || ||| ||||||||||||||||||| | ||||| Sbjct 12343 AGTTCTTTAGCATTTGTGGATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTC 12284 Query 30355 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || || || | ||||| || || || ||||| Sbjct 12283 CAGAACACACATTTGGTTGTCAGCAGAGGAAA 12252 >seq145711 Length=17273 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 11194 TAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGG 11253 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || |||||||| | ||||||||||| ||||| || || ||||| || | Sbjct 11254 CACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCAC 11313 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031 |||||| ||||| || | || ||||| ||||| || ||||||| Sbjct 11314 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCATGA 11357 >seq95250 Length=14987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || |||||||| | | ||||| |||||| || || Sbjct 14027 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14086 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| ||||||| ||||||| ||||| || ||| Sbjct 14087 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAAATTCTGTTTACCT 14134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407734138230173