Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq161317 96.9 3e-15
seq97981 89.7 4e-13
seq110331 86.0 5e-12
seq79216 86.0 5e-12
>seq161317
Length=2104
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || ||||| ||||||||||| ||| | || |||| || | ||||
Sbjct 1840 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 1899
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || |||| || || || || | ||| | |||||||||||| ||||||
Sbjct 1900 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 1959
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||| ||||| | || || || || || |||
Sbjct 1960 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 2019
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || ||||||||
Sbjct 2020 AAGGTCTTGACGAAGATCTGCAT 2042
>seq97981
Length=9611
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| |||| || || | |||||| || || ||| |||||| ||||| ||||| || |
Sbjct 2467 CGCCACCCCACAGACGAAGCACCAACTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTG 2526
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| ||| | ||| || |||| ||| || || ||||| | ||| ||||| || || | |
Sbjct 2527 AAAGAGTATAATCATCTTCCAGCTGTTTGCCTGCAAAAACCAGACGCTGCTGGTCAGAAG 2586
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTC 48715
| | |||||||||||| || || ||| ||| | | || | | | || | |||
Sbjct 2587 GGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACA-ATCTCA-ATGGTGTCACTGGGCTC 2644
Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| | || || || || || |||| || ||| |||| |||||||||
Sbjct 2645 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTTGCAAAGATCTGCATC 2696
>seq110331
Length=4397
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| || || ||||| || || ||| |||| | || || | ||||||||| || || |||
Sbjct 1808 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1867
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
||||||||||| |||| ||||| ||||||||||||
Sbjct 1868 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 1902
>seq79216
Length=33065
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || |||| |||| || || ||| |||||| || || ||||| |||||
Sbjct 3635 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3694
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || | || |||| |||||| || ||||| || || | ||| || || | |||
Sbjct 3695 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3754
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| ||||| || ||||| ||| ||| | | | || | |||||||
Sbjct 3755 ATGCCTTCCTTATCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 3814
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || || || || |||| || || ||||| ||||||||
Sbjct 3815 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380113984457523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |