Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq161317 96.9 3e-15 seq97981 89.7 4e-13 seq110331 86.0 5e-12 seq79216 86.0 5e-12 >seq161317 Length=2104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| ||||||||||| ||| | || |||| || | |||| Sbjct 1840 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 1899 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| || || || || | ||| | |||||||||||| |||||| Sbjct 1900 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 1959 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||| ||||| | || || || || || ||| Sbjct 1960 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 2019 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 2020 AAGGTCTTGACGAAGATCTGCAT 2042 >seq97981 Length=9611 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| |||| || || | |||||| || || ||| |||||| ||||| ||||| || | Sbjct 2467 CGCCACCCCACAGACGAAGCACCAACTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTG 2526 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | ||| | ||| || |||| ||| || || ||||| | ||| ||||| || || | | Sbjct 2527 AAAGAGTATAATCATCTTCCAGCTGTTTGCCTGCAAAAACCAGACGCTGCTGGTCAGAAG 2586 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTC 48715 | | |||||||||||| || || ||| ||| | | || | | | || | ||| Sbjct 2587 GGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACA-ATCTCA-ATGGTGTCACTGGGCTC 2644 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | || || || || || |||| || ||| |||| ||||||||| Sbjct 2645 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTTGCAAAGATCTGCATC 2696 >seq110331 Length=4397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || ||| |||| | || || | ||||||||| || || ||| Sbjct 1808 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1867 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| |||| ||||| |||||||||||| Sbjct 1868 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 1902 >seq79216 Length=33065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| |||| || || ||| |||||| || || ||||| ||||| Sbjct 3635 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3694 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 3695 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3754 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||||| ||| ||| | | | || | ||||||| Sbjct 3755 ATGCCTTCCTTATCTTGGATCTTGGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 3814 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || || ||||| |||||||| Sbjct 3815 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380113984457523