Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq113390 282 5e-71 seq41520 149 7e-31 seq79867 91.5 2e-13 >seq113390 Length=24774 Score = 282 bits (312), Expect = 5e-71 Identities = 628/939 (67%), Gaps = 9/939 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| || || | |||| || |||| |||||||| || || | ||| ||| Sbjct 8039 CCAGGGCTTTCTGCCTTAGATGTTCATCTAAACACTGGATGGCAAAGAAGTCAATGTCCA 7980 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 | || ||||| || || || | ||| || ||| || |||||| || | || || | Sbjct 7979 CGTCAAACTTATTGGCAAATAAGTGGTG---GTTGCGCAGTATCCAGTTCAAGTCACCTG 7923 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || |||||||| ||||| || || |||||||| || ||||| ||||||| | Sbjct 7922 CTCCGAAAACACACACGGAGCGCACATGGACACCGCTGCAGGGTGGATAGGGGGCCCCCT 7863 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||||| || ||||||||||| | Sbjct 7862 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCCTGCATGTCAG 7803 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||||| | | | || | || ||||| | || | ||||| | || Sbjct 7802 ACATGTCATACTTGTGGCTTAAGGACAATGAGCCTGGAACTTCAGGGATCCTCTGAATAG 7743 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | || Sbjct 7742 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGA 7683 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||||| || || || ||| | || | ||| || || || | Sbjct 7682 TTTTTTCATTCTCTAGAACATACTCCACATACTTCCTACTGACCACAAAATAGGCACTGC 7623 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||||||| |||||| ||||| || | Sbjct 7622 CTGAAAACAGAGGTGTTTCAAGAGGAGGGGGCATTTTGTCAGTCCCCGTATTTGTGAGTT 7563 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| || | || | | || ||||||| | | ||| || | | | | Sbjct 7562 TTCCATCAAAGATTGCATAATGTTTTTTCCACCTTTCTTTTTTATGGGATGGCATTTTCT 7503 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || || || |||| ||| || | ||| || | | || || || || |||| Sbjct 7502 CTGTTTCCAGGTTGTTTTCTCCCATTAACGACTTGAGTTTCCTGACAATTTCCAGGTTGG 7443 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | || |||||||| || | || ||||| | | | | || Sbjct 7442 TTTTAATAGGAAAATCCATACCACAGAGATTTATCAAGTACTTCCAATCTGCATTCATTC 7383 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | |||||| || |||||||| || |||||||| || || ||||| | Sbjct 7382 TGTAGAGGTCCTGCATACAGTTGAGGTCGGCCTGAACCCGACTCCATGATGCATACACCA 7323 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | |||||| | | |||| ||||||||||| |||||| || | || || |||| | Sbjct 7322 CAGTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCAATACCAGTCACTG 7263 Query 162839 CCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 || | |||| ||| |||| ||| || || || || | |||||| | |||||||| Sbjct 7262 CC-GCCAGAAAGGAATC--CTCCGATTTTCTGTCCACATGAATGCAGTAGAAATTCTGAG 7206 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | || || | ||| || || || || || ||||| || | Sbjct 7205 GCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGG 7146 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 |||| ||||| || ||||| || || || ||| |||| Sbjct 7145 AATATGCTATTGGAAACTCTGCTTCTTCTTTACTAAGAG 7107 >seq41520 Length=21859 Score = 149 bits (164), Expect = 7e-31 Identities = 220/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || | || || |||| || ||||||||||| | | Sbjct 20336 CAAAGAGAGTGAGGCAGGCTATTCCTGCGATCTTCCCGGCACCGAAAGTATTAAAGAGGC 20395 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| ||||| ||||| || || | || || || | | Sbjct 20396 ACTTGTAACACCCTTCATCCTCCAGAGTGGTATTCCAGAAGGTAATGGTTGAGTTCCGAA 20455 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||||| | | ||| || |||||||||| ||||| || || | Sbjct 20456 GTCCCAGCTCAGTTATGTTCATCTTATTCTTATAACGAGGCTGGACCACAACCCCATGTT 20515 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | |||||| || |||||||||| ||| | ||||| || |||||||| || || | Sbjct 20516 CATTGCTGAAGGTAACCATGTTTTCTGGGGTTACGGCCTTGATTTTCTGCCATGTCACAA 20575 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | | || ||| ||||| ||| |||||||||||||||| | Sbjct 20576 TCAAGACTTCCTGGGAAGATTCCAGAAAGCATTGTAAGGAAGCAGGTGTGTTCAGCGGCT 20635 Query 172071 CCCTTTCGTCTT 172082 | |||| ||||| Sbjct 20636 CTCTTTTGTCTT 20647 Score = 113 bits (124), Expect = 5e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||| || || | || || ||| |||||| ||| | || | ||| |||||||||| Sbjct 17713 ACAGTCTGCCTAAAGTTGGTCACATTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 17770 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||||||||| || |||||||| || || || | || | |||||||| ||||| Sbjct 17771 -TCCCCACTTGACTCTTGGGATCTTTGACCTGGAGGACACTGATGACAGATGTGGTCCCA 17829 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | |||||| || || ||||| || || | || ||||| | Sbjct 17830 TTGGGGTGTGAGATAATCTCAGTACTGTTCTCCATTCCTGACCCAGGGACCTTCCAGGAG 17889 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || ||||| ||||| | ||| | ||||||||||| || |||| Sbjct 17890 ATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTA 17932 >seq79867 Length=81550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 73308 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCTGTTCCACACGTATTTAGGAAGTATTTC 73367 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | ||| || | | ||||||||| || || || || | Sbjct 73368 CA--TGGCACTGAGCTCTGAAGCAGGTCTTCCATACAGTTCAGGTCAGCTTGTACCCTGG 73425 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | || ||||| ||| || | Sbjct 73426 ACCAGGAGGCATAAACCACTCGAACCAACTTACTGGCCAGGAAAACATTTGGGAAGCATG 73485 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || |||| ||| | ||| | | || | |||| ||| || || || Sbjct 73486 AAATAATTGCCTTCACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGCAC 73543 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 || |||| |||||||||||| || | || ||||| | || || || | || ||||| Sbjct 73544 ACAATATATATTCTGAGGGGCATACACAGCTCTCAGCAGCCTTTCAAAGTTTTCAATCTT 73603 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || || ||||| || Sbjct 73604 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 73639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577149319809600