Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq18562 269 2e-67 seq145711 143 2e-29 seq95250 87.8 1e-12 >seq18562 Length=18598 Score = 269 bits (298), Expect = 2e-67 Identities = 484/698 (69%), Gaps = 18/698 (3%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||||||| ||| || || | || ||||| ||| |||||||| || | || |||||| Sbjct 12877 GGAAAGG-TCTTGGTTCTCACTGAAGCTGCAGT-TTCAGCGGCTCAGTATGATTCAGGTA 12820 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 ||||| || ||||||| |||| ||||| || || || | ||| || ||| ||| || Sbjct 12819 AACGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGC 12760 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 ||||||| ||||| || |||||||||| |||||| |||||| | || || |||||||| Sbjct 12759 GATCATGTGGGTGAGCAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTC 12700 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT------CG--CTCACGTAAAAC 30070 | ||||||||||| ||||| || || ||||| || | || |||||| ||| Sbjct 12699 TGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAGAAC 12640 Query 30071 TGACACATGGCGTGGCACGGAGGAAGAGCCATG--AGGCCCAAG-TCTTTGGGGTTCCAG 30127 || || | ||| ||||| ||||| || |||||| ||| ||| ||||| || ||||| Sbjct 12639 TGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAAAGG---AAGATCTTTTGGATTCCAA 12583 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187 || |||| ||||| | ||||| || ||| | |||| | ||| | | |||||| Sbjct 12582 GCACACAGAATGATTCTTCTGTCAGTAGGTTTGGTTTTGATCATGTCAATCACCTTTTGC 12523 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || || |||| || || || || |||| ||| | |||| ||||| || ||| Sbjct 12522 AGTTGGCCCACTCCTTGACCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAAA 12463 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 ||||||||||| || || || || || || | || ||||||| ||| ||| || Sbjct 12462 TGCCTCCACTGAAAGCC-TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCCA 12404 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 |||| ||||| | || || ||||| |||||||| || || ||| | || Sbjct 12403 AGGCCATCCAGGAAGTCACGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGAC 12344 Query 30368 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30427 || ||||| | |||||||| || ||| ||||||||||||||||||| | ||||| Sbjct 12343 AGTTCTTTAGCATTTGTGGATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTC 12284 Query 30428 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGA 30487 || || || | ||||| || || || ||||| | | | |||| ||| || ||| | Sbjct 12283 CAGAACACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCTCGCCCGC 12224 Query 30488 GAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTC 30525 | ||||| |||| | || ||||| || | ||| Sbjct 12223 ACGCTGAACACCGACAGGGTGCCGGTGCCTGTGCGGTC 12186 >seq145711 Length=17273 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 11194 TAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGG 11253 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || |||||||| | ||||||||||| ||||| || || ||||| || | Sbjct 11254 CACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCAC 11313 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 |||||| ||||| || | ||| ||||| ||||| || ||||||| Sbjct 11314 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCATGA 11357 >seq95250 Length=14987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || |||||||| | | ||||| |||||| || || Sbjct 14027 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14086 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| ||||||| ||||||| ||||| || ||| Sbjct 14087 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAAATTCTGTTTACCT 14134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405431926568892