Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq97981 102 5e-17
seq161317 96.9 2e-15
seq548 86.0 4e-12
seq85393 82.4 5e-11
>seq97981
Length=9611
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||| | |||||| || || ||| ||| || |||||||| || ||||
Sbjct 2467 CGCCACCCCACAGACGAAGCACCAACTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTG 2526
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|||| || || ||||| || ||||| || ||||| | | |||||| ||||| | |
Sbjct 2527 AAAGAGTATAATCATCTTCCAGCTGTTTGCCTGCAAAAACCAGACGCTGCTGGTCAGAAG 2586
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | |||||||||||| ||| ||| | ||| || || ||| ||||| | |||
Sbjct 2587 GGATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACAATCTCAATGGTGTCACTGGGCTCA 2645
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | ||| || || || || || | || || |||| ||||||||
Sbjct 2646 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTTGCAAAGATCTGCAT 2695
>seq161317
Length=2104
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| |||||||| ||||| |||||||| || || |||
Sbjct 1306 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 1365
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| | ||||||||||| || || || || || | |||||||| || || ||
Sbjct 1366 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 1425
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 1426 ATACCCTCCTTGTCCTGGATCTT 1448
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/212 (69%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| |||||| |||||| |||||||| ||||| || || || || |||| ||||| ||
Sbjct 1840 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 1899
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT- 34622
|| ||||| || || || || || ||||| || || | ||||||||||| |||||
Sbjct 1900 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 1959
Query 34623 ---TTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTAC 34678
||| || ||||| ||||| ||| || || | ||| || || || |
Sbjct 1960 GACTTGACATTGTCGATA-----GTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGC 2014
Query 34679 CGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||| || || || || || ||||||||| ||
Sbjct 2015 CGGTCAAGGTCTTGACGAAGATCTGCATGATG 2046
>seq548
Length=19863
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || ||| ||| || |||||||| || || || || || |
Sbjct 10973 AGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTGCAG 10914
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || ||||| || |||| || | | ||| ||||| || || | ||||||
Sbjct 10913 CCATCCTCCAGCTGTTTGCCCACAAACATCAGTCACTGCTGGTCAGGTGGGATGCCCTCC 10854
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| ||||| | ||| || || | |||
Sbjct 10853 TTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 10795
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 10794 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10756
>seq85393
Length=7687
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || |||||| ||| || ||| |||| || || || || || || | |||||
Sbjct 5670 ACCAAGTGCAGAGTGGACTCTTTCTGAGTGTTTTAGTCCGAGAGAGTGCGGCCATCTTCC 5611
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| ||||| || ||||| || | ||||| ||||| ||||| | |||||||||||| |
Sbjct 5610 AGCTGTTTGCCTGCAAAAATCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTAG 5551
Query 34618 ATCTT 34622
|| ||
Sbjct 5550 ATTTT 5546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314049131098433
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |