Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_028770.1
Length=59878
Score E
Sequences producing significant alignments: (Bits) Value
seq176284 129 2e-25
seq174594 113 2e-20
>seq176284
Length=10592
Score = 129 bits (142), Expect = 2e-25
Identities = 286/420 (68%), Gaps = 18/420 (4%)
Strand=Plus/Plus
Query 5838 CACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCACCACGGCCTGCGC-CT 5894
|| |||||| || || || || ||||||||||||||| | ||| | ||| || ||
Sbjct 9487 CATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGGTGGAAGCGCT 9546
Query 5895 GCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGA 5954
| ||| | | | | |||||||| || | ||||| || || ||||| | ||
Sbjct 9547 GAACGAGTCGCGCGTG---CAGCGCCTGATCCTGGTGCGGCCTGCGGTCGAGGCCGGCGA 9603
Query 5955 GAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGAT 6014
|||||||||||||||||||||| || | ||||| | | |||||||| ||| |
Sbjct 9604 GAAGCTCGGCTTCCTGCCCGGCGACCTGACCCAGAAGGTCGATCCCTACCTGCGGCCGCT 9663
Query 6015 GCTGGACGCGGTGATCGACCTGGTCGGCCCGACGA---TGACGAAGCGCCTCCTCGAGTC 6071
| ||||| || ||| || | ||| | || || ||||| | || |||
Sbjct 9664 GTACGACGCCCTGTACGAAATGATGGGCGTGGAGAAGGTGGTGAAGC---TGCTGGAGAA 9720
Query 6072 G--CGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACG 6129
| || || | ||| |||| |||||||| |||||||| ||||| ||| |||||||| ||
Sbjct 9721 GAACGTCATC--GAGATCGCACCGCTGGCGTACATGCGTGGCCGCACGCTCAACGACGCG 9778
Query 6130 TACATCGTCGCTGACGAGATGCAGAACGCCACCC-CGCGCCAGACCGCGCTGCTGGTGAC 6188
| | | || |||||| ||||||| ||||| || || ||| | || | ||||
Sbjct 9779 TTCGTGATCCTGGACGAGGCGCAGAACACCACCATCGAGC-AGATGAAGATGTTCCTGAC 9837
Query 6189 CCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCC 6248
||| ||||||||||| | | ||||| | | ||| |||| | ||||| |||||||||
Sbjct 9838 CCGGCTGGGCTTCGGCTCCACCGCCGTGGTCACCGGCGACCTGACCCAGACCGACCTGCC 9897
>seq174594
Length=7134
Score = 113 bits (124), Expect = 2e-20
Identities = 250/369 (68%), Gaps = 11/369 (3%)
Strand=Plus/Minus
Query 47966 CAGCACCCGGACAGCCCAGGCGAGGTCGCCATCGTCCTCCGGGGCAAGATGGGCACCGGC 48025
|||||||| || || | |||||||| |||| | || ||||| || |||||| |||
Sbjct 6000 CAGCACCCCGAGAGGGTCGCGGAGGTCGCGATCGCCTTCAGGGGCGCGAAGGGCACGGGC 5941
Query 48026 AAGT---CGTTCCTGGTCAAGTGCTTCGGGAACCTGTTCGGGCGTCA-CTTCATGCAGGT 48081
||| || || || | | ||| || || || |||| | | | | |||| |
Sbjct 5940 AAGAGCACGCTC--GGCCGGGCGCT-CGCCAAGCTCG-CGGGGGCGAGCGGCCTGCACAT 5885
Query 48082 GTCCGATCCGAAGCACCTCGTGGGCTCCTTCAACGCCCACCTGCGCGACTGCGTGGTGCT 48141
|| | ||| ||| |||||||| |||||| ||||||| | ||||| | ||||
Sbjct 5884 CGCCAACCCGTCGCAGCTCGTGGGGAGGTTCAACTCCCACCTCCAGAACTGCATCCTGCT 5825
Query 48142 GTTCGGGGACGAGGCGTTCTACGCTGGCGACAAGAAGCACGAGTCCATCCTCAAGACGCT 48201
||||| |||||||||||||| || ||||||||| | |||||| | || ||| ||||
Sbjct 5824 GTTCGCGGACGAGGCGTTCTGGGCCGGCGACAAGGCGGGCGAGTCGGTGCTGAAGGCGCT 5765
Query 48202 GATCACCGAGGAGGTCATCATCGTCGAGGGCAAGGGCGTCGATGCAGAGGCCGCCCCGAA 48261
| || ||| | | ||| ||||||||||||| ||| || | | | | |||
Sbjct 5764 CGTGACGGAGCCGACGCTGATCTACGAGGGCAAGGGCCGCGACGCCGTGATGGGCAGGAA 5705
Query 48262 CTACGTCCATCTGCTGATGGCCTCCAACTCCGAGTGGGTGGTGCCTGCTGGCCCGGA--- 48318
| |||| || | | ||||| |||||| ||| ||||| ||||| || ||| |||
Sbjct 5704 CCACGTGCACATCGTCATGGCATCCAACAACGACTGGGTCGTGCCGGCCGGCATGGACGG 5645
Query 48319 GGAGCGCCG 48327
||||||||
Sbjct 5644 CGAGCGCCG 5636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191084604318080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |