Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq176284 129 2e-25 seq174594 113 2e-20 >seq176284 Length=10592 Score = 129 bits (142), Expect = 2e-25 Identities = 286/420 (68%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 5838 CACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCACCACGGCCTGCGC-CT 5894 || |||||| || || || || ||||||||||||||| | ||| | ||| || || Sbjct 9487 CATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGGTGGAAGCGCT 9546 Query 5895 GCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGA 5954 | ||| | | | | |||||||| || | ||||| || || ||||| | || Sbjct 9547 GAACGAGTCGCGCGTG---CAGCGCCTGATCCTGGTGCGGCCTGCGGTCGAGGCCGGCGA 9603 Query 5955 GAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGAT 6014 |||||||||||||||||||||| || | ||||| | | |||||||| ||| | Sbjct 9604 GAAGCTCGGCTTCCTGCCCGGCGACCTGACCCAGAAGGTCGATCCCTACCTGCGGCCGCT 9663 Query 6015 GCTGGACGCGGTGATCGACCTGGTCGGCCCGACGA---TGACGAAGCGCCTCCTCGAGTC 6071 | ||||| || ||| || | ||| | || || ||||| | || ||| Sbjct 9664 GTACGACGCCCTGTACGAAATGATGGGCGTGGAGAAGGTGGTGAAGC---TGCTGGAGAA 9720 Query 6072 G--CGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACG 6129 | || || | ||| |||| |||||||| |||||||| ||||| ||| |||||||| || Sbjct 9721 GAACGTCATC--GAGATCGCACCGCTGGCGTACATGCGTGGCCGCACGCTCAACGACGCG 9778 Query 6130 TACATCGTCGCTGACGAGATGCAGAACGCCACCC-CGCGCCAGACCGCGCTGCTGGTGAC 6188 | | | || |||||| ||||||| ||||| || || ||| | || | |||| Sbjct 9779 TTCGTGATCCTGGACGAGGCGCAGAACACCACCATCGAGC-AGATGAAGATGTTCCTGAC 9837 Query 6189 CCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCC 6248 ||| ||||||||||| | | ||||| | | ||| |||| | ||||| ||||||||| Sbjct 9838 CCGGCTGGGCTTCGGCTCCACCGCCGTGGTCACCGGCGACCTGACCCAGACCGACCTGCC 9897 >seq174594 Length=7134 Score = 113 bits (124), Expect = 2e-20 Identities = 250/369 (68%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 47966 CAGCACCCGGACAGCCCAGGCGAGGTCGCCATCGTCCTCCGGGGCAAGATGGGCACCGGC 48025 |||||||| || || | |||||||| |||| | || ||||| || |||||| ||| Sbjct 6000 CAGCACCCCGAGAGGGTCGCGGAGGTCGCGATCGCCTTCAGGGGCGCGAAGGGCACGGGC 5941 Query 48026 AAGT---CGTTCCTGGTCAAGTGCTTCGGGAACCTGTTCGGGCGTCA-CTTCATGCAGGT 48081 ||| || || || | | ||| || || || |||| | | | | |||| | Sbjct 5940 AAGAGCACGCTC--GGCCGGGCGCT-CGCCAAGCTCG-CGGGGGCGAGCGGCCTGCACAT 5885 Query 48082 GTCCGATCCGAAGCACCTCGTGGGCTCCTTCAACGCCCACCTGCGCGACTGCGTGGTGCT 48141 || | ||| ||| |||||||| |||||| ||||||| | ||||| | |||| Sbjct 5884 CGCCAACCCGTCGCAGCTCGTGGGGAGGTTCAACTCCCACCTCCAGAACTGCATCCTGCT 5825 Query 48142 GTTCGGGGACGAGGCGTTCTACGCTGGCGACAAGAAGCACGAGTCCATCCTCAAGACGCT 48201 ||||| |||||||||||||| || ||||||||| | |||||| | || ||| |||| Sbjct 5824 GTTCGCGGACGAGGCGTTCTGGGCCGGCGACAAGGCGGGCGAGTCGGTGCTGAAGGCGCT 5765 Query 48202 GATCACCGAGGAGGTCATCATCGTCGAGGGCAAGGGCGTCGATGCAGAGGCCGCCCCGAA 48261 | || ||| | | ||| ||||||||||||| ||| || | | | | ||| Sbjct 5764 CGTGACGGAGCCGACGCTGATCTACGAGGGCAAGGGCCGCGACGCCGTGATGGGCAGGAA 5705 Query 48262 CTACGTCCATCTGCTGATGGCCTCCAACTCCGAGTGGGTGGTGCCTGCTGGCCCGGA--- 48318 | |||| || | | ||||| |||||| ||| ||||| ||||| || ||| ||| Sbjct 5704 CCACGTGCACATCGTCATGGCATCCAACAACGACTGGGTCGTGCCGGCCGGCATGGACGG 5645 Query 48319 GGAGCGCCG 48327 |||||||| Sbjct 5644 CGAGCGCCG 5636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191084604318080