Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13]
177,401 sequences; 1,960,317,893 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq41520 192 5e-44
seq85367 122 7e-23
seq18562 118 9e-22
seq145711 91.5 1e-13
>seq41520
Length=21859
Score = 192 bits (212), Expect = 5e-44
Identities = 205/271 (76%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 1260 TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCA 1319
|| ||| | ||| | | || ||||| | ||||| |||||||| ||| | || || |
Sbjct 20606 TGCTTTCTGGAATCTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCCGTA 20547
Query 1320 AGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATAC 1379
| |||||||||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 20546 ACCCCAGAAAACATGGTTACCTTCAGCAATGAACATGGGGTTGTGGTCCAGCCTCGTTAT 20487
Query 1380 AAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAAC 1439
|| |||| ||||||||||||||||| ||||| | ||| |||| || |||||||||||
Sbjct 20486 AAGAATAAGATGAACATAACTGAGCTGGGACTTCGGAACTCAACCATTACCTTCTGGAAT 20427
Query 1440 ACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAG 1499
|| || |||| ||||||||||| |||||||| | ||||| ||||| || | ||||||
Sbjct 20426 ACCACTCTGGAGGATGAAGGGTGTTACAAGTGCCTCTTTAATACTTTCGGTGCCGGGAAG 20367
Query 1500 ATGTCAGGAATAGGGTGTCTAACCCTTTTTG 1530
|| ||||||||| || || || || ||||
Sbjct 20366 ATCGCAGGAATAGCCTGCCTCACTCTCTTTG 20336
>seq85367
Length=46346
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||
Sbjct 118 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAA 177
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 178 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 237
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||||||
Sbjct 238 ATCGCCCTGTGGATGACAGA 257
>seq18562
Length=18598
Score = 118 bits (130), Expect = 9e-22
Identities = 402/622 (65%), Gaps = 21/622 (3%)
Strand=Plus/Minus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || |||||||| |||||| | ||||||| || || || ||||| || | || |||
Sbjct 12854 AGCTGCAGTTTCAGCGGCTCAGTATGATTCAGGTAAACGTGTGCATCTCCCAAAGTGTGT 12795
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| || ||||| || | || || | | ||| || ||||||| || | || ||||
Sbjct 12794 ACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGCGATCATGTGGGTGAGCAGGGAGTAG 12735
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
|||| | || || || | ||||| |||||||||||||| |||||||| | |||||
Sbjct 12734 CTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAG 12675
Query 118636 GAGAGCTCCCCGT--------TTGCAACATAAAACTGACTTATGATGTGACATGGAGGCA 118687
|| |||||||| | | | || || ||||| | | | || |||||||| |
Sbjct 12674 GACAGCTCCCCATTCATCACGTAGACACGTAGAACTGGCAAAGGGCATGGCATGGAGGTA 12615
Query 118688 GAACCATGGAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATG 118747
| ||||| || || | |||||||| || | || |||||| | |
Sbjct 12614 GGGCCATGAAAGGAAGATCTTTTGGATTCCAAGCACACAGAATGATTCTTCTGTCAGTAG 12555
Query 118748 GTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACT 118807
||| | || ||||| | || || | || |||| || | || | ||| |
Sbjct 12554 GTTTGGTTTTGATCATGTCAATCACCTTTTGCAGTTGGCCCACTCCTTGACCTGAATAAT 12495
Query 118808 GAGACTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGC 118866
|| || ||| ||| ||||||||||||||| ||||| ||||| || ||||| ||
Sbjct 12494 CTGAATC-CATATTTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCC-TAAACTGGG 12437
Query 118867 CCCAGATCTCCCTGGGACCT-----AAAATCTAAACCTACTTTTCTCTGAAATTCTTTTG 118921
|| | ||| |||| || | |||| || | | || | | || || |
Sbjct 12436 CCTAAATCCCCCTCTTTTCTGCTAGAGAATCCAAGGCCA----TC-CAGGAAGTCACGAG 12382
Query 118922 ACCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAAC 118981
||||||| |||| ||| || ||||| | ||| ||| || |||| ||||| || |
Sbjct 12381 ACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGACAGTTCTTTAGCATTTGTGGATC 12322
Query 118982 CACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAA 119041
| | | |||||| || |||||||| | || || |||| || || ||| ||||| |
Sbjct 12321 CGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTCCAGAACACACATTTGGTTGTCA 12262
Query 119042 ACAGTGGAAACTGACCTCTAAG 119063
||| ||||| | | |||| ||
Sbjct 12261 GCAGAGGAAATTCATCTCTCAG 12240
>seq145711
Length=17273
Score = 91.5 bits (100), Expect = 1e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| || |||||||| || | || ||||||||| | || || ||
Sbjct 11195 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 11254
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| |||||||||||||| |||||||| | ||||| || |||||||| || |
Sbjct 11255 ACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCACC 11314
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAA 118698
|| || ||||| | | | || || ||||| || ||||| ||
Sbjct 11315 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCATGAAA 11359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413580670202164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |