Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18562 255 5e-63 seq145711 165 7e-36 seq95250 87.8 1e-12 >seq18562 Length=18598 Score = 255 bits (282), Expect = 5e-63 Identities = 470/694 (68%), Gaps = 10/694 (1%) Strand=Plus/Minus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||||| ||| || || | || ||||| | ||||||| || || | ||||| Sbjct 12877 GGAAAGG-TCTTGGTTCTCACTGAAGCTGCAGTTTCAGCGGCTCAGTATGATTCAGGTAA 12819 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 ||||| |||||||||| ||||| ||||| || || || | ||| || ||| ||| || Sbjct 12818 ACGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGCG 12759 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 ||||||| ||||| || |||||||||| |||||| ||||| | || || |||||||| Sbjct 12758 ATCATGTGGGTGAGCAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTCT 12699 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT------CG--CTCACGTAAAACT 29843 ||||||||||||| |||||||| || ||||| || | || |||||| |||| Sbjct 12698 GCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAGAACT 12639 Query 29844 GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCAC 29903 | || | ||||||||| ||||| |||||||||| | | ||||| || ||||| |||| Sbjct 12638 GGCAAAGGGCATGGCATGGAGGTAGGGCCATGAAAGGAAGATCTTTTGGATTCCAAGCAC 12579 Query 29904 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 29963 ||| ||||| | ||||| || ||| | |||| | ||| | | |||||||| | Sbjct 12578 ACAGAATGATTCTTCTGTCAGTAGGTTTGGTTTTGATCATGTCAATCACCTTTTGCAGTT 12519 Query 29964 GATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCC 30023 | |||| || || || || |||| | ||||||| Sbjct 12518 GGCCCACTCCTTGACCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAAATGCC 12459 Query 30024 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30083 ||||||| || || || || || || | || ||||||| ||| ||| || Sbjct 12458 TCCACTGAAAGCC-TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCCAAGGC 12400 Query 30084 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30143 |||| ||||| | || || ||||| |||||||| || || ||| | || || | Sbjct 12399 CATCCAGGAAGTCACGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGACAGTT 12340 Query 30144 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 |||| | |||||||| || ||| ||||||||||||||||||| | ||||||| | Sbjct 12339 CTTTAGCATTTGTGGATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTCCAGA 12280 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACC 30263 | || | ||||| || || || ||||| | | | |||| ||| |||||| | | Sbjct 12279 ACACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCTCGCCCGCACGC 12220 Query 30264 CAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 |||| |||| | || |||||||| | ||| Sbjct 12219 TGAACACCGACAGGGTGCCGGTGCCTGTGCGGTC 12186 >seq145711 Length=17273 Score = 165 bits (182), Expect = 7e-36 Identities = 135/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 11194 TAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGG 11253 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || |||||||| ||||||||||||| |||||||| || ||||| || | Sbjct 11254 CACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCAC 11313 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGA 29876 |||||| ||||| || | ||||||||| ||||| |||||||||| Sbjct 11314 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCATGA 11357 >seq95250 Length=14987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 14027 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14086 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| ||||||| ||||||| ||||| |||||| Sbjct 14087 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAAATTCTGTTTACCT 14134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405285044826286