Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteronotus_20parnellii_20[genbank_20GCA_5F000465405.1_202013-09-13] 177,401 sequences; 1,960,317,893 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq18562 275 5e-69 seq145711 143 2e-29 >seq18562 Length=18598 Score = 275 bits (304), Expect = 5e-69 Identities = 485/698 (69%), Gaps = 18/698 (3%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||||||| ||| || || | || ||||| ||| |||||||| || |||| |||||| Sbjct 12877 GGAAAGG-TCTTGGTTCTCACTGAAGCTGCAGT-TTCAGCGGCTCAGTATGATTCAGGTA 12820 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 ||||| || ||||||| ||||| ||||| || || || | ||| || ||| ||| || Sbjct 12819 AACGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTTAGGCCCATGATGTGTGC 12760 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 ||||||| ||||| || |||||||||| |||||| |||||| | || || |||||||| Sbjct 12759 GATCATGTGGGTGAGCAGGGAGTAGCTGGAGATGTTGAAGGGTGCGCCCAGGCCCATGTC 12700 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTC----TCCATCGCTT----ACGTAAAAC 27336 | ||||||||||| ||||| || || ||||| | |||| | | ||||| ||| Sbjct 12699 TGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCATCACGTAGACACGTAGAAC 12640 Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATG--AGGCCCAAG-TCTTTGGGGTTCCAG 27393 || || | ||| ||||| ||||| || |||||| ||| ||| ||||| || ||||| Sbjct 12639 TGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAAAGG---AAGATCTTTTGGATTCCAA 12583 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 27453 || |||| ||||| | ||||| || ||| | |||| | ||| | | |||||| Sbjct 12582 GCACACAGAATGATTCTTCTGTCAGTAGGTTTGGTTTTGATCATGTCAATCACCTTTTGC 12523 Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 || || |||| || || || || ||| ||| | |||| ||||| || ||| Sbjct 12522 AGTTGGCCCACTCCTTGACCTGAATAATCTGAATCCATATTTTTGTATTCTGCCCCAAAA 12463 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 |||||||| || || || || || || || | || ||||||| ||| ||| || Sbjct 12462 TGCCTCCACTGAAAGCC-TAAACTGGGCCTAAATCCCCCTCTTTTCTGCTAGAGAATCCA 12404 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 27633 |||| ||||| | || || ||||| |||||||| || || ||| | || Sbjct 12403 AGGCCATCCAGGAAGTCACGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGTTGAC 12344 Query 27634 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 27693 || ||||| | |||||||| || ||| ||||||||||||||||||| | ||||| Sbjct 12343 AGTTCTTTAGCATTTGTGGATCCGTTGATAAACCACAGCAGCTCCTCCAAAATCCCCTTC 12284 Query 27694 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGA 27753 || || || | ||||| || || || ||||| | | | |||| ||| || ||| | Sbjct 12283 CAGAACACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCTCGCCCGC 12224 Query 27754 GAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 | ||||| |||| | || ||||| || | ||| Sbjct 12223 ACGCTGAACACCGACAGGGTGCCGGTGCCTGTGCGGTC 12186 >seq145711 Length=17273 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 11194 TAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGG 11253 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || |||||||| | ||||||||||| ||||| || || ||||| |||| Sbjct 11254 CACGCCCAGGCCCATGTCTGCTGACCTCTGGTATAGCTGGCAGGACAGCTCCCCATTCAC 11313 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 ||||| ||||| || | ||| ||||| ||||| || ||||||| Sbjct 11314 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGTAGGGCCATGA 11357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368708297836031