Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7796 122 7e-23 seq13090 89.7 4e-13 seq10551 84.2 2e-11 >seq7796 Length=1511589 Score = 122 bits (134), Expect = 7e-23 Identities = 346/522 (66%), Gaps = 15/522 (3%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC-TGTCAATC 18856 ||||| |||| ||||| ||||||| ||| || || ||| | ||||| ||| | || Sbjct 1339815 GGCCCAGTTTATGGCTTTCAGTGGAAGTCTTTGGGGGCAGAAGACAAAGATATGT-ATTC 1339757 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 | | || | | |||||| || || ||||| | || | | | |||| ||||| || Sbjct 1339756 AGATTACTCAGGTCAAGGAGCAGACCAACTGCACAAGGTGACACA--CAATCAAAACCAA 1339699 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| || | || |||| || | | |||||||||||||| ||| | || | |||| Sbjct 1339698 CCCTGATGACAGAAGAATCATCCTGTGTTCTTGGAATCCAAAAGATTTTCCTTGCATGGC 1339639 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 ||||||| ||||| || | || ||| | || || | ||| |||| | |||||||| Sbjct 1339638 CCTACCTCTGTGTCATACCCTTTGCCAGCTCTATGTGGTGAACAGTGAGCTGTCCTGCCA 1339579 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGC 19096 | ||| |||| || | || |||||||| || || || |||||| |||| ||| | Sbjct 1339578 GCTGTACAAGAGGTCAGCAGACATGGGCCTAGGTGTGCCCTTCAACGTTGCCAAATAGTC 1339519 Query 19097 ACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATAC 19156 || || ||||||| | || || | ||| | || || | || || || | | | Sbjct 1339518 CCTGCT--CCTACATGATTGCACACATCACA-GCCTGAAGCCAGGTGACTTTTTACTCTC 1339462 Query 19157 AATGGGGGATGCACATATTTACTTGAATCATATAGA--TGCTTTAAAAGTGCAGCTAGCT 19214 || | ||||| |||| ||||||| | || ||| | ||| ||||||| | Sbjct 1339461 TTTGACATAGGCACACATTTTTCTGAATCACACTGAACTGC--TGAAAATGCAGCTTTGT 1339404 Query 19215 CGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATG-TAACAGATATAAACGA 19273 ||| |||| ||||| || || |||| || |||| | | ||| || || || Sbjct 1339403 CGAGAACCAAGGCCTTTCCCAAAGCTCCAAATCCTTTGAAAAGTTGACA---ATCAATGA 1339347 Query 19274 CTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACA 19315 |||||| || || |||||| |||| || |||||||| || Sbjct 1339346 CTTTAAGGCTGAAGACTTTCAGATTGAAGGGTATAATCCTCA 1339305 >seq13090 Length=34591212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||||||||||| || || | || ||||| || || | || ||||| | ||| Sbjct 25833404 ATGGCCCTACCTCCATGCCATACCCTTTGCCAGTTCTATGTGGTGAATGGTGAGCTGTCC 25833463 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || | || ||||||||||| || || |||||||| || | Sbjct 25833464 TGCCAGCTGTACCAGAGGTCAGCAGACATGGGCCTTGGTGTGCCCTTCAACATCGCCAGC 25833523 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || ||||| || | || || | ||||| || || Sbjct 25833524 TACGCCCTGCTCACCTATATGATCGCACACATCACAGGCCTGAA 25833567 >seq10551 Length=27482606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 271/406 (67%), Gaps = 11/406 (3%) Strand=Plus/Plus Query 18810 GGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-CAAACTATTTACA 18868 ||||| |||| ||| |||||||| || ||||| ||||| | | ||| || | |||| Sbjct 11321532 GGCTTTCAGTAGAGGCATTTTGGGGCAGAATACAAAGA-TATGAATTCAGATTATTCTAG 11321590 Query 18869 GCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||| | | || || ||| ||| | | ||| ||| || || ||||| || | | Sbjct 11321591 TCAAGCAGTAGACCAACTGAAAAAGATAACTCATATAATCAACACCAACCCTGATGACAG 11321650 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 | |||| || | | ||||||||||||| || | || | ||||| || || ||| Sbjct 11321651 AAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTTCCTCTCATGGTCTTATCTGCATA 11321710 Query 18989 TCACACGTTATG-TCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGA 19047 ||| | | || ||| | || || | ||| ||| | | || |||| ||| ||||||| Sbjct 11321711 TCATGCTCTTTGCTCA-TCCTATGTGGAAAATGGTAAGCTGTCTTGCC-AGTGTACCAGA 11321768 Query 19048 GATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTT-ACC 19106 | | | ||| ||| | | | || | ||||||||||| || | ||| || ||| Sbjct 11321769 GGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATTGCCAACTACTC-CTTGTTCACC 11321827 Query 19107 TACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCATACAATGGGGGA 19165 ||||| | | || ||| |||| | | || || ||||| | | || |||| || Sbjct 11321828 TACATGATCACACAAATTA-TGGACCTGAGGCCAGGTGATTTTGTATACACTTTGGGAGA 11321886 Query 19166 TGCACATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCT 19210 ||| || |||||| ||||||| || || ||| | ||| ||||||| Sbjct 11321887 TGCCCACATTTACCTGAATCACATTGA-GCTGCTGAAAATGCAGCT 11321931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399184606289910