Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq65597 167 2e-36 seq7281 111 1e-19 seq10551 100 2e-16 >seq65597 Length=65395183 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26943 ACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGC 27002 |||| | | |||||||| || || || |||||||| ||| ||||||||||||| || | | Sbjct 33874410 ACATGGCGGACAATGGGGGTGACACAGGTGCAGCCGACATTCACTAGCATCTTTTCCATC 33874469 Query 27003 CTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATA 27062 || || || |||||| | || || | | |||| || || |||||||| || || Sbjct 33874470 TGGAAGGAGTTGGGGCAGTGCCGAGGCTGTCTTCGCAGGACCAGGATCTCTTGCTGAATG 33874529 Query 27063 GGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGA 27122 || || ||||||| ||||| |||||| ||||| ||| ||||||| || |||| ||| Sbjct 33874530 GGAACGGAGTTCAGGTGGTGGTCTACCTTCCCTTCACCATTAACGCAGAACAAGTGGCGG 33874589 Query 27123 CACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| || ||||| ||||||||||||||||| || | || |||||||| Sbjct 33874590 CACTTCGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTGCG 33874639 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || || |||| |||||| || || |||| |||| | | | ||| Sbjct 33875806 TGGAGATTCCAAGGTGAGGTGGATCGATTGTAATAATCCGAAGGCCTTCTGAGATTCGTA 33875865 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGC- 27292 |||| |||| ||||| | | | ||| |||||| | | || ||| | |||| ||| Sbjct 33875866 TTCCGGTTAAGGATGTTTAGGTTGACCTTCACAGTCTGAGGGAAGTTCTTGTCCTCAGTA 33875925 Query 27293 --TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | |||||| ||| |||||| | ||| |||| ||| ||| |||| | | ||| Sbjct 33875926 TTTGAGCATCCTGGATTTTGTGGGATTGCTATTCCTGCCTTCCCTATGGCCACCAGACTC 33875985 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 33875986 AGCAGCAGCAG 33875996 >seq7281 Length=49932807 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||| || ||| ||||| Sbjct 13773591 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTACTTCTTAACTCTGGT 13773650 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 13773651 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTTTGGA 13773710 Query 4285 AGCTCC 4290 | ||| Sbjct 13773711 GGTTCC 13773716 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||| || Sbjct 13780829 CTTAAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTTGGG 13780888 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||| |||| || Sbjct 13780889 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCCTTTTACCT 13780937 Score = 105 bits (116), Expect = 5e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 13771341 AAGTTTATATTTCCCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 13771400 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||| | || ||||| ||||||| || || ||| | ||||| ||||| || Sbjct 13771401 GATCTTTGTGACAAATAGTTTAATATGGCCTGGCTTGCTCATGGCTTCCTT 13771451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| |||||||||||||||||||||||||| | |||| Sbjct 13764351 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 13764410 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||||||||| ||| ||| Sbjct 13764411 TCCTCCTGGACATCGGAAAGAACACCTGGGTAT 13764443 >seq10551 Length=27482606 Score = 100 bits (110), Expect = 2e-16 Identities = 284/430 (66%), Gaps = 5/430 (1%) Strand=Plus/Minus Query 101671 CTGCATTTTAAG-AGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGA 101729 ||||||||| || ||| |||||||||| | || ||||| |||||||| | ||| | | Sbjct 11321929 CTGCATTTTCAGCAGC-TCAATGTGATTCAGGTAAATGTGGGCATCTCCCAAAGTGTATA 11321871 Query 101730 TAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGC 101789 ||| || || ||| || | | | || | |||||| | || || | || ||| Sbjct 11321870 CAAAATCACCTGGCCTCAGGTCCATAATTTGTGTGATCATGTAGGTGAACAAGGAGTAGT 11321811 Query 101790 TAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGG 101849 | |||||||| || |||| | | ||| || || | || || |||| | | || | Sbjct 11321810 TGGCAATGTTGAAGAGCACACACACGTCCACGTCCACTAACCTCTGGTACACTGG-CAAG 11321752 Query 101850 AAAGCTTTCCATCACAGACATAAAATTGACTTAATA-CATGACAAGGCGGCAACACCATT 101908 | ||||| |||| ||||| || || || | ||||| | | | || ||||| Sbjct 11321751 ACAGCTTACCATTTTCCACATAGGAT-GAGCAAAGAGCATGATATGCAGATAAGACCATG 11321693 Query 101909 TTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT 101968 ||||| | | |||||||||||||| | || ||||| || |||||| || Sbjct 11321692 AGAGGAAGATATTTTGGATTCCAAGCACACAGGATAATTCTTCTGTCATCAGGGTTGGTG 11321633 Query 101969 TTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCA 102028 || || ||| | | | || ||| | |||||| ||| ||| | |||||| Sbjct 11321632 TTGATTATATGAGTTATCTTTTTCAGTTGGTCTACTGCTTGACTAGAATAATCTGAATTC 11321573 Query 102029 ACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCT 102088 | | |||| |||||||| || ||||||||| ||||||| |||| || || || ||| Sbjct 11321572 ATATCTTTGTATTCTGCCCCAAAATGCCTCTACTGAAAGCCATTAACTGGATGAAAATCC 11321513 Query 102089 CCTTCATCTC 102098 ||||| |||| Sbjct 11321512 CCTTCGTCTC 11321503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360962388471098