Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8729 208 9e-49 seq14102 159 4e-34 seq13090 158 1e-33 seq7796 120 4e-22 >seq8729 Length=5610107 Score = 208 bits (230), Expect = 9e-49 Identities = 524/781 (67%), Gaps = 19/781 (2%) Strand=Plus/Plus Query 9583 AACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATT 9642 || |||||| | ||||||||||| ||||| || || ||||||| ||||| ||||| Sbjct 4328964 AATTTGGCACTTTCTGACTTGCTCTTTCTGTTGACCCTGCCATTCTGGATTCACTACGCC 4329023 Query 9643 GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGT 9702 | || | || | ||| |||||| | ||||||| ||||| ||| | | | Sbjct 4329024 A-AGTGGACCA--ACTGGGTTTTTGGCCACAGCATGTGTAAGTTGCTCTCGGGCCTTTAT 4329080 Query 9703 TACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTA 9762 ||| | ||||| | || |||| |||||||||||| || ||||| |||| | Sbjct 4329081 TACCTAGGCTTGTACGGGGAGAGTTTTTTCATCATCCTGCTGACCATAGACCGGTACGTG 4329140 Query 9763 GCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACC 9822 || | ||| |||| || ||| || || | | || || || | ||| || | | | Sbjct 4329141 GCCATCGTCCATGCCGTGTTTGCCCTGCGGATCCGGACCGTCACTTTTGGGATCATCAGC 4329200 Query 9823 TGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGG 9881 |||| |||||| | ||| |||| | | || ||||||| || |||| ||| Sbjct 4329201 AGTGTCCTCACCTGGGTCTTGGTAGGGCTAGCAGTGA-TCCCTGAGATTATCTTCCATAA 4329259 Query 9882 ACACCAAGATGACAATGGTAGGGT-TC--AGTGTGATCCTTACTACCCAGAGATGTCTAC 9938 |||||| ||| |||| || | ||| | | | ||||| |||| | | Sbjct 4329260 GTCCCAAGA-GACGTC--TAGGAACTCGTACTGTAGTTCATTTTACCCGGAGAA-TGAAG 4329315 Query 9939 AA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTC 9997 || | |||| || || |||| | ||| | | || ||||| || |||||| Sbjct 4329316 AAGACACCTGGAAACGTTTTCAGGTTGTGAGAATGAATGTTTTGTGTCTCGTTCTGCCTC 4329375 Query 9998 TGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCA 10057 ||||| | ||||| |||||||| || ||| || | || ||| |||| ||||||| | Sbjct 4329376 TGCTCGTGATGGCCATCTGCTACACTGGAATCATTAAAACGCTGATGAGATGCCCCAGTA 4329435 Query 10058 AGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTT 10117 | |||||||||| ||||||| ||||||| ||||||||||||||| || ||| |||| | Sbjct 4329436 AAAAGAAGTACAGGGCCATCCGGCTCATTTTTGTCATCATGGTGATCTTTTTCCTTTTCT 4329495 Query 10118 GGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC--CTTCTTAACCT 10175 |||| ||||||||| | |||||||| | || || ||||| |||| |||||| Sbjct 4329496 GGACGCCCTACAACCTGGTTCTCCTTATTTCCACTTTTCA---AACCATCTTCTTCGAGA 4329552 Query 10176 GCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234 |||| |||| || || | ||||| |||| |||| | | || | | |||| Sbjct 4329553 GCAGCTGTGAGCGGAACAAACAGCTGGACGTGGCCCTGCAGGTGACGGAGGTGATCGCCT 4329612 Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294 ||| ||||| || ||||||| ||||||||||| || || | |||||||| | | Sbjct 4329613 TCACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTTGTCAGCGAGAAGTTCCGGGAGC 4329672 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 |||| ||| ||||| ||||| |||||||| | |||| |||| | |||||||| | Sbjct 4329673 ACCTTAGCCATTTCTTTCACACGCACGTGGCCCTGCACCTGGGCAAACATATCCCCTTTC 4329732 Query 10355 T 10355 | Sbjct 4329733 T 4329733 Score = 208 bits (230), Expect = 9e-49 Identities = 524/781 (67%), Gaps = 19/781 (2%) Strand=Plus/Plus Query 176469 AACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATT 176528 || |||||| | ||||||||||| ||||| || || ||||||| ||||| ||||| Sbjct 4328964 AATTTGGCACTTTCTGACTTGCTCTTTCTGTTGACCCTGCCATTCTGGATTCACTACGCC 4329023 Query 176529 GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGT 176588 | || | || | ||| |||||| | ||||||| ||||| ||| | | | Sbjct 4329024 A-AGTGGACCA--ACTGGGTTTTTGGCCACAGCATGTGTAAGTTGCTCTCGGGCCTTTAT 4329080 Query 176589 TACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTA 176648 ||| | ||||| | || |||| |||||||||||| || ||||| |||| | Sbjct 4329081 TACCTAGGCTTGTACGGGGAGAGTTTTTTCATCATCCTGCTGACCATAGACCGGTACGTG 4329140 Query 176649 GCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACC 176708 || | ||| |||| || ||| || || | | || || || | ||| || | | | Sbjct 4329141 GCCATCGTCCATGCCGTGTTTGCCCTGCGGATCCGGACCGTCACTTTTGGGATCATCAGC 4329200 Query 176709 TGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGG 176767 |||| |||||| | ||| |||| | | || ||||||| || |||| ||| Sbjct 4329201 AGTGTCCTCACCTGGGTCTTGGTAGGGCTAGCAGTGA-TCCCTGAGATTATCTTCCATAA 4329259 Query 176768 ACACCAAGATGACAATGGTAGGGT-TC--AGTGTGATCCTTACTACCCAGAGATGTCTAC 176824 |||||| ||| |||| || | ||| | | | ||||| |||| | | Sbjct 4329260 GTCCCAAGA-GACGTC--TAGGAACTCGTACTGTAGTTCATTTTACCCGGAGAA-TGAAG 4329315 Query 176825 AA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTC 176883 || | |||| || || |||| | ||| | | || ||||| || |||||| Sbjct 4329316 AAGACACCTGGAAACGTTTTCAGGTTGTGAGAATGAATGTTTTGTGTCTCGTTCTGCCTC 4329375 Query 176884 TGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCA 176943 ||||| | ||||| |||||||| || ||| || | || ||| |||| ||||||| | Sbjct 4329376 TGCTCGTGATGGCCATCTGCTACACTGGAATCATTAAAACGCTGATGAGATGCCCCAGTA 4329435 Query 176944 AGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTT 177003 | |||||||||| ||||||| ||||||| ||||||||||||||| || ||| |||| | Sbjct 4329436 AAAAGAAGTACAGGGCCATCCGGCTCATTTTTGTCATCATGGTGATCTTTTTCCTTTTCT 4329495 Query 177004 GGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC--CTTCTTAACCT 177061 |||| ||||||||| | |||||||| | || || ||||| |||| |||||| Sbjct 4329496 GGACGCCCTACAACCTGGTTCTCCTTATTTCCACTTTTCA---AACCATCTTCTTCGAGA 4329552 Query 177062 GCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120 |||| |||| || || | ||||| |||| |||| | | || | | |||| Sbjct 4329553 GCAGCTGTGAGCGGAACAAACAGCTGGACGTGGCCCTGCAGGTGACGGAGGTGATCGCCT 4329612 Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180 ||| ||||| || ||||||| ||||||||||| || || | |||||||| | | Sbjct 4329613 TCACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTTGTCAGCGAGAAGTTCCGGGAGC 4329672 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 |||| ||| ||||| ||||| |||||||| | |||| |||| | |||||||| | Sbjct 4329673 ACCTTAGCCATTTCTTTCACACGCACGTGGCCCTGCACCTGGGCAAACATATCCCCTTTC 4329732 Query 177241 T 177241 | Sbjct 4329733 T 4329733 >seq14102 Length=4978252 Score = 159 bits (176), Expect = 4e-34 Identities = 132/160 (83%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 138081 GCAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATC 138140 |||||||| ||||||| |||||| || || ||||||||||| ||||||||||| | Sbjct 325919 GCAGCGCCGAAGCCTCAGCCTGAGTGTCTTCAGCTTTTCCCCAAGGGAGTTCACGTG--- 325863 Query 138141 CTTTTCCTG--GTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAAC 138198 |||| || ||| | || ||| |||| ||||||||||||||||||||||||||||| Sbjct 325862 --TTTCTTGATGTCTGGGCCCTGGCTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAAT 325805 Query 138199 TGGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct 325804 TGGATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 325765 Score = 123 bits (136), Expect = 3e-23 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 137926 TTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTC 137985 ||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 328059 TTTTTCATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTC 328000 Query 137986 ATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||| |||||||||||||| || ||||||| Sbjct 327999 ATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 327969 Score = 91.5 bits (100), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCAT-- 138293 |||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 325494 CCTTAAAGTCCTCCAGCAAGGACCCGTTCAGCAATATGTTGTCCAGCTGGTCCTTCATTT 325435 Query 138294 -CTGAAAGAAG 138303 ||| |||||| Sbjct 325434 GCTGCAAGAAG 325424 >seq13090 Length=34591212 Score = 158 bits (174), Expect = 1e-33 Identities = 132/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||| ||||| ||||||| ||||||||| |||||||||||| Sbjct 25833564 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25833505 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| | || | |||||||||||||||||| ||||| || | || Sbjct 25833504 ACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 25833445 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 || ||||||||||| ||| ||||| || || ||||||||| Sbjct 25833444 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATG 25833403 >seq7796 Length=1511589 Score = 120 bits (132), Expect = 4e-22 Identities = 134/177 (76%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 145735 AAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTG 145794 ||||| || |||| |||| |||| ||| || | |||||||| |||||||| || || Sbjct 1339471 AAGTCACCTGGCTTCAGGCT-GTGATGTGTGCAATCATGTAGG--AGCAGGGACTATTTG 1339527 Query 145795 GCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAG 145854 || | |||||||||||| || || |||||||| | || | || ||||||||||||||| Sbjct 1339528 GCAACGTTGAAGGGCACACCTAGGCCCATGTCTGCTGACCTCTTGTACAGCTGGCAGGAC 1339587 Query 145855 AGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 ||||| | | | |||| |||| |||||| ||| || || | || ||||||||| Sbjct 1339588 AGCTCACTGTTCACCACATAGAGCTGGCAAAGGGTATGACACAGAGGTAGGGCCATG 1339644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589592951775920