Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5349 289 3e-73 seq13495 269 3e-67 seq7265 217 2e-51 seq65595 107 2e-18 >seq5349 Length=6841011 Score = 289 bits (320), Expect = 3e-73 Identities = 267/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | | |||| || ||||| ||||||| |||||| Sbjct 685547 AGCAGGGCTTCGATGTCGGGCTCGATGTCGATGGTCGGGAAGCGGCGGCTGTATCTGCGC 685606 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || |||||| ||||||| ||||||||||||||||||||| | |||||||||| Sbjct 685607 ACAGGAACGCCGTCCCGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAATGTCGTTGCGG 685666 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || ||||||||| |||| || ||| ||| ||| |||| | | ||||||| || Sbjct 685667 CATACCGGAGACCAGATGATGAACTTGGGATCGGTCATTAGCGCGGTGGTGTCGTCACTG 685726 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||| ||||| | | ||||| ||||||||| || ||| ||| ||||| || Sbjct 685727 GGCGCCGGCAGAGCCTCCCTCAAGAAGGTGAAGAGCGGGTGCGCCTGTGCGCCGTTCACG 685786 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 685787 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 685846 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | || | || ||||||||| Sbjct 685847 AGAGAATTCAGGATCTCTTCGTTTTTGGTGTTTTCCTG 685884 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 686115 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACCACCAGACCCCGGGGCCCGAGGC 686174 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 686175 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 686234 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 686235 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 686294 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || ||| |||| ||||| || Sbjct 686295 CCAGCGGGCGCGCGGAGTAGGCATACACGGA 686325 >seq13495 Length=11191978 Score = 269 bits (298), Expect = 3e-67 Identities = 384/538 (71%), Gaps = 2/538 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| |||||| ||||| | | | |||| | ||| | |||| |||| ||| Sbjct 2600981 CAGGGCTATGATGTCTGGCTCGATGTAGATGGTCGGAAAGCTACAGTTGTATCTGCACAC 2600922 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 || || ||| ||||||| |||||||||||||||| ||| |||| |||| |||| Sbjct 2600921 AGGAACGCTGTCCCGGCCCACCAGGAACTTCTCGAAGTTCTCGGCAACGTTGTTGAGGCA 2600862 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || | ||| ||| |||| || ||| || || || | | || |||| || || Sbjct 2600861 TACCAGGGACAAGGTGATGAACTTGGGCTCCGCCATGAACACAGTGGTGACGTCACTGGG 2600802 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 | ||||| ||||| | | ||||| ||||| || || || |||| | || |||| Sbjct 2600801 CAAGGGCAGAGCCTCCCTCAAAAAGGCAAAGAGGGGGTGCACCTGTGCATCATTCCCCTC 2600742 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||||| || ||||| |||||||| |||| ||| | | || || ||| || Sbjct 2600741 GCACTTCTCGAAGAACACGAAGTTGGGCTCGAACCCGTCACCAAGTCCGATGTACTTGAG 2600682 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| || |||| |||| ||| || ||||| || ||||||||| | |||||||| Sbjct 2600681 GGAATTCACAATCTATTTGTTCTTGGCATTCTCCTGATGCCCGAACTGGGTGCACGGGAA 2600622 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 |||||||| ||||| |||| || || |||| ||||||||||||||||||| ||||| Sbjct 2600621 GCCAAGCACCACCAGGCCCC-AGGGCCAGAGCGCTGCTGCAGCTCGTTCATCTGGGTGTA 2600563 Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 || ||||||| | |||||||| |||| | ||||| | ||| | ||| |||||| Sbjct 2600562 GCCCTGGACCGTTGTGCCTCAGAGCTACGCCATATTCTCAAAGAGTAGCACCTTGCCCCG 2600503 Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 | | |||| | ||||||| | || | |||| | ||||| || |||||||| ||| Sbjct 2600502 AAGGGAGCCCAGGCTCACAAGCTC-CAGCCGGCCAGTGGGCGCGCAGAGAAGGCATAC 2600446 >seq7265 Length=31414696 Score = 217 bits (240), Expect = 2e-51 Identities = 292/405 (72%), Gaps = 25/405 (6%) Strand=Plus/Plus Query 83075 GGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT-ACCTGCGCACGGGCGTGCCGTCAGC 83133 ||||| | | | | |||| | |||||||||||| | |||||||| || ||||| Sbjct 18927722 GGCTCGATGTCGATGGTCGGAAAGCGGTGGCTGTTATCTGCGCACAGGAACACCGTCCCG 18927781 Query 83134 ACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGC 83193 |||||| |||| ||||||||||||||| |||||||||||||| | |||||||||| Sbjct 18927782 GCCCACCCGGAACCCCTCGAAGTTCCAGGCAACGTCGTTGCGGCATCCCGGAGACCAGGT 18927841 Query 83194 AATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTC 83253 ||||| || ||| ||| ||| ||||| || |||| || ||||| |||| Sbjct 18927842 AATGAACTTGGGATCGGTCATGAGCGCAACAGTGACGTCACTGGGCGCGGGCA------- 18927894 Query 83254 TCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAG 83313 |||||||| ||| || ||||| || ||||| ||||||||||||| || Sbjct 18927895 ------GAAGGCGAGGAGTGG--GTGCCATT-CACCG-------CGCACTTCTCGAAAAG 18927938 Query 83314 CATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC 83373 | | ||||| |||||||| | | ||||| || |||| ||| ||||| || |||||| Sbjct 18927939 CGTGAAGTTGGGCTCGAACCTGCCGCCAGGTCGCACGTACTTGAGGGACCTCAGGATCTC 18927998 Query 83374 GGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAG 83433 | ||| |||||| |||| || ||| ||||||| ||| || | ||||| ||||| Sbjct 18927999 TTCGTTCCTGGCGTTGGCCTGATGCCCGCACTGGTTGCAC-AGAGGCAGAGCACCACCAG 18928057 Query 83434 CCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 | ||| | || ||||||||||||||||| |||||| | ||||| Sbjct 18928058 ACTCCGCGGCCCGAGGCGCCGCTGCAGCTCCTTCATCCGGGTGTA 18928102 >seq65595 Length=21688981 Score = 107 bits (118), Expect = 2e-18 Identities = 203/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 3496248 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 3496190 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| | | || || |||||||| || |||||||||| || ||| | ||| ||| Sbjct 3496189 TTGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAATTGCA 3496130 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 ||||||| | |||||| |||| || |||||| ||| | | |||| || ||| Sbjct 3496129 GCGGCTCCCTAGGCAAGAAGCAG-CTGGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 3496074 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| ||||| ||||| |||| |||| || Sbjct 3496073 TACGTGCAGCTGCTCTACCCACGGGCCAAGAACGACCGCGTCTGGACGCTGGAGTTTGTG 3496014 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||||||||||||||||||||| | |||||| || |||||| Sbjct 3496013 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3495966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608297601843920