Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04]
65,598 sequences; 1,985,975,446 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq5349 289 3e-73
seq13495 269 3e-67
seq7265 217 2e-51
seq65595 107 2e-18
>seq5349
Length=6841011
Score = 289 bits (320), Expect = 3e-73
Identities = 267/338 (79%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||||||||| | | | | |||| || ||||| ||||||| ||||||
Sbjct 685547 AGCAGGGCTTCGATGTCGGGCTCGATGTCGATGGTCGGGAAGCGGCGGCTGTATCTGCGC 685606
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || |||||| ||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 685607 ACAGGAACGCCGTCCCGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAATGTCGTTGCGG 685666
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || ||||||||| |||| || ||| ||| ||| |||| | | ||||||| ||
Sbjct 685667 CATACCGGAGACCAGATGATGAACTTGGGATCGGTCATTAGCGCGGTGGTGTCGTCACTG 685726
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||||||||| ||||| | | ||||| ||||||||| || ||| ||| ||||| ||
Sbjct 685727 GGCGCCGGCAGAGCCTCCCTCAAGAAGGTGAAGAGCGGGTGCGCCTGTGCGCCGTTCACG 685786
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| |||
Sbjct 685787 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 685846
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|| ||| || |||||| | || | || |||||||||
Sbjct 685847 AGAGAATTCAGGATCTCTTCGTTTTTGGTGTTTTCCTG 685884
Score = 192 bits (212), Expect = 7e-44
Identities = 169/211 (80%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 686115 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACCACCAGACCCCGGGGCCCGAGGC 686174
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 686175 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 686234
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| ||||||| ||| |||||| | | |||| | |||||| || || || || |
Sbjct 686235 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 686294
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| |||||| || ||| |||| ||||| ||
Sbjct 686295 CCAGCGGGCGCGCGGAGTAGGCATACACGGA 686325
>seq13495
Length=11191978
Score = 269 bits (298), Expect = 3e-67
Identities = 384/538 (71%), Gaps = 2/538 (0%)
Strand=Plus/Minus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||| |||||| ||||| | | | |||| | ||| | |||| |||| |||
Sbjct 2600981 CAGGGCTATGATGTCTGGCTCGATGTAGATGGTCGGAAAGCTACAGTTGTATCTGCACAC 2600922
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|| || ||| ||||||| |||||||||||||||| ||| |||| |||| ||||
Sbjct 2600921 AGGAACGCTGTCCCGGCCCACCAGGAACTTCTCGAAGTTCTCGGCAACGTTGTTGAGGCA 2600862
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
|| | ||| ||| |||| || ||| || || || | | || |||| || ||
Sbjct 2600861 TACCAGGGACAAGGTGATGAACTTGGGCTCCGCCATGAACACAGTGGTGACGTCACTGGG 2600802
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298
| ||||| ||||| | | ||||| ||||| || || || |||| | || ||||
Sbjct 2600801 CAAGGGCAGAGCCTCCCTCAAAAAGGCAAAGAGGGGGTGCACCTGTGCATCATTCCCCTC 2600742
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
|||||||||||||| || ||||| |||||||| |||| ||| | | || || ||| ||
Sbjct 2600741 GCACTTCTCGAAGAACACGAAGTTGGGCTCGAACCCGTCACCAAGTCCGATGTACTTGAG 2600682
Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418
|||| || |||| |||| ||| || ||||| || ||||||||| | ||||||||
Sbjct 2600681 GGAATTCACAATCTATTTGTTCTTGGCATTCTCCTGATGCCCGAACTGGGTGCACGGGAA 2600622
Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478
|||||||| ||||| |||| || || |||| ||||||||||||||||||| |||||
Sbjct 2600621 GCCAAGCACCACCAGGCCCC-AGGGCCAGAGCGCTGCTGCAGCTCGTTCATCTGGGTGTA 2600563
Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538
|| ||||||| | |||||||| |||| | ||||| | ||| | ||| ||||||
Sbjct 2600562 GCCCTGGACCGTTGTGCCTCAGAGCTACGCCATATTCTCAAAGAGTAGCACCTTGCCCCG 2600503
Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596
| | |||| | ||||||| | || | |||| | ||||| || |||||||| |||
Sbjct 2600502 AAGGGAGCCCAGGCTCACAAGCTC-CAGCCGGCCAGTGGGCGCGCAGAGAAGGCATAC 2600446
>seq7265
Length=31414696
Score = 217 bits (240), Expect = 2e-51
Identities = 292/405 (72%), Gaps = 25/405 (6%)
Strand=Plus/Plus
Query 83075 GGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT-ACCTGCGCACGGGCGTGCCGTCAGC 83133
||||| | | | | |||| | |||||||||||| | |||||||| || |||||
Sbjct 18927722 GGCTCGATGTCGATGGTCGGAAAGCGGTGGCTGTTATCTGCGCACAGGAACACCGTCCCG 18927781
Query 83134 ACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGC 83193
|||||| |||| ||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 18927782 GCCCACCCGGAACCCCTCGAAGTTCCAGGCAACGTCGTTGCGGCATCCCGGAGACCAGGT 18927841
Query 83194 AATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTC 83253
||||| || ||| ||| ||| ||||| || |||| || ||||| ||||
Sbjct 18927842 AATGAACTTGGGATCGGTCATGAGCGCAACAGTGACGTCACTGGGCGCGGGCA------- 18927894
Query 83254 TCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAG 83313
|||||||| ||| || ||||| || ||||| ||||||||||||| ||
Sbjct 18927895 ------GAAGGCGAGGAGTGG--GTGCCATT-CACCG-------CGCACTTCTCGAAAAG 18927938
Query 83314 CATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC 83373
| | ||||| |||||||| | | ||||| || |||| ||| ||||| || ||||||
Sbjct 18927939 CGTGAAGTTGGGCTCGAACCTGCCGCCAGGTCGCACGTACTTGAGGGACCTCAGGATCTC 18927998
Query 83374 GGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAG 83433
| ||| |||||| |||| || ||| ||||||| ||| || | ||||| |||||
Sbjct 18927999 TTCGTTCCTGGCGTTGGCCTGATGCCCGCACTGGTTGCAC-AGAGGCAGAGCACCACCAG 18928057
Query 83434 CCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478
| ||| | || ||||||||||||||||| |||||| | |||||
Sbjct 18928058 ACTCCGCGGCCCGAGGCGCCGCTGCAGCTCCTTCATCCGGGTGTA 18928102
>seq65595
Length=21688981
Score = 107 bits (118), Expect = 2e-18
Identities = 203/290 (70%), Gaps = 13/290 (4%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 3496248 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 3496190
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| | | || || |||||||| || |||||||||| || ||| | ||| |||
Sbjct 3496189 TTGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAATTGCA 3496130
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584
||||||| | |||||| |||| || |||||| ||| | | |||| || |||
Sbjct 3496129 GCGGCTCCCTAGGCAAGAAGCAG-CTGGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 3496074
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
|| |||||| |||| |||| ||| ||||| ||||| |||| |||| ||
Sbjct 3496073 TACGTGCAGCTGCTCTACCCACGGGCCAAGAACGACCGCGTCTGGACGCTGGAGTTTGTG 3496014
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
| ||||||||||||||||||||||| | |||||| || ||||||
Sbjct 3496013 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3495966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608297601843920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |