Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq4924 89.7 4e-13 seq65591 84.2 2e-11 >seq4924 Length=6499587 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 25024 ATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA 25083 |||| || ||||||||||| ||| | || || |||| ||||| ||||| ||| ||| Sbjct 3091056 ATAG-GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAG 3090998 Query 25084 CGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGC 25143 ||||||| || || | | || | ||| || || ||||| ||||| | | Sbjct 3090997 TGGAACCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCC 3090938 Query 25144 CCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGG 25203 || ||| || || || || |||||||| ||||| || |||||||| | ||| | Sbjct 3090937 CCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 3090878 Query 25204 CCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 | |||||||| ||||| || || || || || ||| |||| |||| Sbjct 3090877 CTGATTACAACATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACG 3090832 >seq65591 Length=11041708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTC-CAAAACTATGGCCGAT 25208 |||| ||||||||||||||||| ||||| ||| |||||||| || | || || | ||| Sbjct 2177475 ATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCT-TGTCTGAT 2177417 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||| ||||||||||| || |||||||| | ||||| Sbjct 2177416 TACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 2177379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410468377971572