Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5812 152 5e-32 seq4924 132 5e-26 seq65597 113 5e-20 seq4361 111 2e-19 seq7793 98.7 1e-15 seq10551 89.7 5e-13 seq3210 89.7 5e-13 seq5818 82.4 8e-11 >seq5812 Length=6624047 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 3076525 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076584 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 3076585 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076643 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| |||||||| ||||||||| Sbjct 3076644 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAA 3076703 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||||||||||| || Sbjct 3076704 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGGGGAGG 3076751 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 3075612 AATGCAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3075671 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| |||||| || || | ||||| |||||||||||| | |||| Sbjct 3075672 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 3075730 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || || || |||||||| |||| |||||||||| |||||||| Sbjct 3075731 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACA 3075790 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| ||| |||| ||||| || || Sbjct 3075791 ACATCCAGAAAGAGTCCACCCTGCACCTGGT 3075821 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 3075841 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3075900 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 3075901 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3075959 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3075960 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076019 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| |||| ||||| || || Sbjct 3076020 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076049 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 3076069 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076128 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 3076129 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076187 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3076188 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076247 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| |||| ||||| || || Sbjct 3076248 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076277 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 3076297 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076356 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 3076357 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076415 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3076416 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076475 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| |||| ||||| || || Sbjct 3076476 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076505 >seq4924 Length=6499587 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 3091049 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 3090990 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || || ||||||||| | ||| Sbjct 3090989 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGAC 3090930 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || || ||| Sbjct 3090929 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 3090870 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||| ||| | || ||||| || || | || ||||||||||| Sbjct 3090869 AACATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACGTCTGAGGGGCGGC 3090819 >seq65597 Length=65395183 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || | |||||| ||||| || | | ||||| ||| Sbjct 13732941 ATGCAGATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 13732882 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| |||| | ||||| | ||||| || |||||||| ||||| Sbjct 13732881 AACACCACTGATAACG-TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCA 13732823 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||||||||||||||||| ||| | ||||| ||| |||||||| Sbjct 13732822 GCAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAA 13732763 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||| ||| |||| ||||| Sbjct 13732762 CATTCAGAAAGAGTCCACTCTGCA 13732739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || | | ||| || || ||||| |||||||| |||| ||||| ||| Sbjct 48054907 ATGCAAATCTTTATGATAACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 48054848 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || || | ||| | ||||| | || | |||||||||| | ||||| Sbjct 48054847 GATGCCACTGAGAATGG-CAAAGCTAAAATCCAAGATGAGGAGGGCATCCTACCTGACCA 48054789 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 | | || || || | ||||||||||||||||| || | || ||| ||| ||||||||| Sbjct 48054788 GTAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATG-GC-CACACTCTCCGACTACAA 48054731 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| | ||| | | || |||||||| Sbjct 48054730 TATCCAGAAAGAGTCCAC-CTGCACTTGGTGCTTGGTCTG-GGGGCGGC 48054684 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||| | || Sbjct 11098253 ATGCAGATCTTCGTGAAGACTCTGACAGGCAAGACCATCACACTTGAGGTCAAGTTCAGT 11098312 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| |||| | ||||| | ||||| || | |||| | | | ||| Sbjct 11098313 GACACCACTGACAACA-TCAAAGCTAAAATCCGAGACAAGGAAGACATCTCACCTGGCCA 11098371 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGC-GCACCCTCAACGACTACA 40867 ||| | || || | || ||||||||||||| ||| ||| |||| || ||||||| Sbjct 11098372 GCAGTGTCTGATTTTTGCCCGCAAACAGCTGGAGGAC-AGCTGCACTTTCTCAGACTACA 11098430 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGG 40912 | |||||||| ||| |||| ||||| | ||| | || |||||| Sbjct 11098431 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGAGGG 11098475 >seq4361 Length=21435851 Score = 111 bits (122), Expect = 2e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || | |||||| |||||||| ||| ||| | ||| Sbjct 2916624 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 2916565 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||| | |||| | ||||| ||||||||||| | ||||| Sbjct 2916564 GACACCATCGAAAACG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCA 2916506 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA--CCCTCAACGACTAC 40866 | | | || | | ||||||||||||||||| | | |||| |||||| ||||| Sbjct 2916505 GGAGGGTCTGAGTTTTGCGGGCAAACAGCTGGAGAATGGCCGCACTCCCTCA--GACTAT 2916448 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || |||||||| ||| |||| ||||| | ||| | || || |||| ||| Sbjct 2916447 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGC 2916397 >seq7793 Length=19070987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/178 (74%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAAGGAAAA 40775 ||||| |||||| | |||| ||||| ||| |||| | || ||||| |||| | || Sbjct 18919670 GGCAAGACCATCGCACTCGAGGTCGAGCCCAGTGACACCACTGAAAACG-TCAAAGCTAA 18919728 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 ||| | ||||| ||||||||||| | |||||||| || || || | ||||||||||| Sbjct 18919729 AATCCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACA 18919788 Query 40836 GCTGGACGACGAGC-GCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||| ||| |||| ||| ||||| |||| | | ||| |||| ||||| Sbjct 18919789 GCTGGAAGAC-AGCTGCACTCTCTCAGACTAAAACAAC----AAGAGTCCACTCTGCA 18919841 >seq10551 Length=27482606 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || || || || |||||||| |||| || ||| || Sbjct 16152178 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCC 16152237 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || | | ||| | |||| || || | | || || | || || | || Sbjct 16152238 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGAT 16152297 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| | || || ||||| || ||||| || | || || || |||||| Sbjct 16152298 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 16152357 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 ||||| || |||||| ||||||| ||||| ||||||| Sbjct 16152358 AACATTCAAAAGGAGTCCACGCTTCATCTTGTGTTGC 16152394 >seq3210 Length=13039658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC-ACC 40749 |||| || ||||| || || | || | || ||||||||| | || || |||||| | | Sbjct 10166944 TGCAGATCTTCGTGAAGACCTTGACCGAGAAGACCATCACCCTGGAGGT-GAAGCCCAGC 10166886 Query 40750 GACAGCGTGCAA-ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||| | | || || || | || ||||||||||||||| | || || Sbjct 10166885 GACACCATTGAGCACGTTGA-GGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGATCA 10166827 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 | | || |||| || | ||||||||||| || | | || ||| ||||||||| Sbjct 10166826 ATAGAGGCTGATCTTTGCCAGGAAACAGCTGGAAGATGGACACATCCTGTCCGACTACAA 10166767 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||||||||| ||| | || ||| | || || | || |||||||| Sbjct 10166766 CATCCAGAAAGAGTCTACTCTGTACCTGGTCCTTCGTTTGAGGGG 10166722 >seq5818 Length=23789964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | || ||||||||||| ||||| || || || || |||||| || Sbjct 4864146 GAACCACTGCTGAGAGAAAACCCCCGCCGCTTCGTCATCTTTCCTATCGAATACCATGAT 4864205 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || || || ||||| || || ||||| | ||||||||| Sbjct 4864206 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGT 4864258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514796733136480