Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5812 111 1e-19 seq65597 104 2e-17 seq7793 96.9 3e-15 seq4361 95.1 1e-14 seq4924 93.3 4e-14 seq65594 82.4 7e-11 >seq5812 Length=6624047 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| | |||||| || || Sbjct 3075821 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3075762 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || ||||||||||||||| Sbjct 3075761 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 3075702 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3075701 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3075642 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || || |||||||| Sbjct 3075641 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3075613 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| | |||||| || || Sbjct 3076049 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3075990 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || |||||||||||||| Sbjct 3075989 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3075930 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3075929 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3075870 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 3075869 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| | |||||| || || Sbjct 3076277 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3076218 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || |||||||||||||| Sbjct 3076217 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076158 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3076157 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3076098 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 3076097 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| | |||||| || || Sbjct 3076505 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3076446 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || |||||||||||||| Sbjct 3076445 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076386 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3076385 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3076326 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 3076325 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| || ||||| || || Sbjct 3076733 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3076674 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || |||||||||||||| Sbjct 3076673 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076614 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3076613 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3076554 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 3076553 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq65597 Length=65395183 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| ||||||||||| || | |||||| | ||||| Sbjct 13732732 CACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTC 13732791 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || |||| |||||| || | || ||||| ||||||||| Sbjct 13732792 CAGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCG 13732851 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || ||||| || |||||||| | || | || || Sbjct 13732852 GATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTT 13732911 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || |||||||| Sbjct 13732912 GCCCATCAGTGTCTTCACGAAGATCTGCAT 13732941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || ||||| ||| | |||| | |||||| Sbjct 48054701 CACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTCGG--AGAGTGTGGCCATCCTC 48054757 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||| ||| || || | |||||||||| ||| Sbjct 48054758 CAGCTGTTTGCCCGCAAAAATCAGACGCTACTGGTCAGGTAGGATGCCCTCCTCATCTTG 48054817 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| | | || || || || ||||||||||| || | || || Sbjct 48054818 GATTTTAGCTTTGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCTT 48054877 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| ||| | | ||| || ||||| Sbjct 48054878 GCCGGTCAGGGTTATCATAAAGATTTGCAT 48054907 >seq7793 Length=19070987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||||| ||| || || || | ||||| | || || Sbjct 18919848 CACCAAGTGCAGAGTGGACTCTTGTTG----TTTTAGTCTGAGAGAGTGCAGCTGTCTTC 18919793 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || ||||||||||||||| Sbjct 18919792 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 18919733 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| |||||| || ||||||||||| | | || || Sbjct 18919732 GATTTTAGCTTTGACGTTTTCAGTGGTGTCACTGGGCTCGACCTCGAGTGCGATGGTCTT 18919673 Query 118709 GCCG----GTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| | || ||||| |||||||| Sbjct 18919672 GCCGCAATGTCAGGCTCTTCACAAAGATCTGCAT 18919639 >seq4361 Length=21435851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || |||||| || ||| Sbjct 2916415 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTC 2916474 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | | |||| || ||| || || || ||||||||||||||| Sbjct 2916475 CAGCTGTTTGCCCGCAAAACTCAGACCCTCCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2916534 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || | ||||| |||||| || || ||||||| || | || || Sbjct 2916535 GGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTT 2916594 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| || ||||| Sbjct 2916595 GCCCATCAGGGTCTTCACAAAGATTTGCAT 2916624 >seq4924 Length=6499587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| |||||||||||||| | |||||| ||| || Sbjct 3090838 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3090897 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 3090898 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 3090957 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || || || || | ||| | || ||| Sbjct 3090958 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTG 3091017 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 3091018 CCGGTCAGGGTCTTCACGAAGATTTGCAT 3091046 >seq65594 Length=21052295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || ||| ||||||| || || | || ||||||||||| || || | |||| |||||| Sbjct 7854594 ATTCTCCAGCTGTTCGCCTGCAAAAATTAGACGCTGCTGGTCAGGTGTGATGCTCTCCTT 7854535 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| ||| || | ||| ||| || || ||||||||||| || | Sbjct 7854534 GTCTTGGATTTTAGCTTTGACGTTTTCAGTGGTATCACTGGGCTCGACCTCGAGTGTGAT 7854475 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || ||||| |||||| | || ||||| || |||| Sbjct 7854474 GGTCTTGCCCGTCAGAATCTTGACAAACATTTGCA 7854440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433483563169816