Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq65597 104 4e-17 >seq65597 Length=65395183 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| |||||||| |||||||| ||||||||| | || || || Sbjct 16165883 GCATTTTTTGGAGCCCAGCTGAATTCTTTCATCCATGTGATTATGTACTCATACTACGGC 16165942 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||||| ||||||||||| || || || | Sbjct 16165943 TTAACTGCATTTGGACC-ATGGATTCAGAAA-TATCTTTGGTGGAAACGATACCTGACCA 16166000 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 16166001 TGTTGCAGCTGGT 16166013 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||| | | | || || || || || |||| |||||| |||||||| || Sbjct 16168309 GGTTCAGTTCTTTGTGACCATTGGGCACACAGCACTGTCTCTTTACACTGATTGCCCCTT 16168368 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| ||| | || || |||||||| || ||| Sbjct 16168369 CCCAAAATGGATGCACTGGGCTCTAATTGCCTACGCAATCAGCTTCATATTTCTCTTTCT 16168428 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 16168429 TAACTTCTATATTCGGACATACAA 16168452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922439801703920