Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq13092 1712 0.0 seq12054 120 2e-22 >seq13092 Length=35143243 Score = 1712 bits (1898), Expect = 0.0 Identities = 1368/1647 (83%), Gaps = 40/1647 (2%) Strand=Plus/Minus Query 107135 AAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA-C 107193 |||| || |||||||| |||||||||||||| |||||| |||||| || || ||| | Sbjct 14627338 AAGGTTCCTAGGCAGGTCTTGACTGAGGATAAATGTCTAGAGAAGAAATACATTTTTTGC 14627279 Query 107194 CATCACTCTGGAGTTGAACTTGATGTTCT-------------GGATTAGTTTGTAATTAA 107240 |||| || ||||||||||||||| ||||| |||||| ||||||| | | Sbjct 14627278 CATCGCTTTGGAGTTGAACTTGACGTTCTTGGGACACATTCAGGATTAATTTGTAACTGA 14627219 Query 107241 AGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTG 107300 ||| |||||||||||| ||||||| ||||||||| ||| |||||| |||||||| ||| Sbjct 14627218 AGG-ATTTTGTTCTGTTCAAGGATTTCCTCCTCCTCCT---CTGTGCTCAAACTCTACTG 14627163 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 ||||| ||| ||||||||||| | ||||||||||||| || || | | || | ||| Sbjct 14627162 ATCTCTCATTCCATGAAGATGATTCGGTGGAAGAAGAAACTCTGTCAGCAGTATTACCTG 14627103 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 ||| ||||||||| |||| ||||||||||| |||| ||||||||||||| ||||| | Sbjct 14627102 TGGACCCTGGGCTTCTATTTGCTGCTGGCCACTGTTGCTCTGAGACTTTCTCTCAGATCG 14627043 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 || ||||| | |||| | ||||||||||||||||| || | || || ||||||||||| Sbjct 14627042 AAGTGTGACTTTGATTTCCTGGATCTGGAGTCCAGGCACGTTCAAAGCAAGCACTGTAGG 14626983 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| ||||| || ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 14626982 GACATCTTGTATAAGTCCCTGAAGTTGCCAGCAAAGAGATCCATCAACTGTTCTGGAATC 14626923 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | ||||||||||||||||||| | |||| ||||| ||||| ||||| || ||||| Sbjct 14626922 ATCCAAGGGGACCAGGAAGCAGTGACCAAGGCTCTCCTGGACAAGCTGGAGGTCAAGAAG 14626863 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| ||| | || | ||||||||||||| ||||||||||||| || ||| Sbjct 14626862 AAGCGGGAGCCTTACACAGACAGCGATTACCTCAACATGACCAGAGACTGTGTGCACTTT 14626803 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||||| |||||||||||||||||| | |||| || ||||||||| |||||||||| ||| Sbjct 14626802 AAGGCCAAAAGGAAGTTCATACAGTACACACTCAGCAAAGAAGAGTTAGACTTCCCTATT 14626743 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 || ||||| ||||||||||||||||| ||||||||||||||| |||||||| | ||| || Sbjct 14626742 GCATACTCTATGGTGGTCCATGAGAAAATTGAAAACTTTGAAAGGCTGCTGAGGGCCTTG 14626683 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 |||||||||||||||||||| |||||||||||||||| |||||| || || ||||||||| Sbjct 14626682 TATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCTCCGGAAACTTTCAAA 14626623 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| Sbjct 14626622 GAGGCAGTCAAGGCAATTATTTCATGCTTCCAAAATGTCTTCATGGCCAGTAAGTTGGTT 14626563 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 14626562 CGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGATCTTAACTGTATGGAAGACTTG 14626503 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || || Sbjct 14626502 CTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACCTGCGGAACAGACTTTCCTATT 14626443 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 14626442 AAGACCAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAAGGGGAAGAACAATATGGAG 14626383 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || ||| ||||| |||||| |||||| |||||||||||| ||||||| |||||||||| Sbjct 14626382 TCAGAGATACCTACTGAGTTTAAAAAATCTCGCTGGAAATATCGCTATGTGGTGACAGAC 14626323 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 || | || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 14626322 ACCATACACATGACCAGCAAGATGAAGGACCCTCCTCCTGATAATTTACCTATGTTCACT 14626263 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| ||||||| |||||||||||||||||||| ||| |||| ||||| ||| Sbjct 14626262 GGGAATGCCTATATTGTGGCTTCTCGAGCCTTTGTCCAACACGTCATAGAGAACCCCAAA 14626203 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||||| |||| | ||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 14626202 TCCCAACAACTGATCGAATGGGCAAAAGACACTTATAGCCCCGATGAACACCTCTGGGCC 14626143 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||| | || |||||||||||||||||||| ||||||||| |||||| || Sbjct 14626142 ACTCTTCAGCGTACACCCTGGATGCCTGGCTCTGTTCCCTACCACCCCAAATATCACTTC 14626083 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 ||||||||| | |||| |||||||| |||||||||||| |||| || ||||||||||| Sbjct 14626082 TCAGACATGGCCTCCATTGCCAGGCTGGTCAAGTGGCAGAACCATGAAGGAGATGTCAGT 14626023 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||||| ||||||||||| |||||||||||||| | | |||| ||||| |||| || Sbjct 14626022 ATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGA 14625963 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || |||||| || | |||||||| ||||||||||| || ||||| |||||||||||||| Sbjct 14625962 GCTGGGGACTTGCATTGGATTCTTCAGAACCATCATCTGTTGGCCAACAAGTTTGACCCT 14625903 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | |||||| ||||| || || |||||| ||||||| ||| ||||| |||||||||||||| Sbjct 14625902 AAGGTGGACGATAATGTTCTTCAGTGCCTAGAAGAATACTTACGTTATAAGGCCATCTAT 14625843 Query 108621 GGGACTGAACTTTGAGCTGCA------------------CTGTGGGCCAGGGAC-TGTGC 108661 |||| |||||| | || | || ||| ||| |||| || |||| Sbjct 14625842 GGGATTGAACTCTTAGATACATTATGAGAGAATTGCTACCTGCGGGGCAGGAACACGTGC 14625783 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 ||||||||||| ||| |||| || | | ||||||| ||| ||||| | | ||| | Sbjct 14625782 AAACATGCCCAGAACGTGCTGGGACAGCATAGGGTGGGAGACCAGGGC--TCAATTCCGT 14625725 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||| || || ||| || |||||||| Sbjct 14625724 GGCACCCTCCGGGGAAAG-GGGCTGCT 14625699 >seq12054 Length=25135041 Score = 120 bits (132), Expect = 2e-22 Identities = 570/889 (64%), Gaps = 35/889 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | || Sbjct 22267007 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 22267066 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| | || ||| | ||| | || |||||||| | || || | Sbjct 22267067 ATCGAAATGCTTGACAGACTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 22267126 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | ||||| | | |||| || || Sbjct 22267127 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATTGGCATTGCATCTTGT 22267186 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| || ||| ||||| ||||| || ||| || Sbjct 22267187 TTCAATAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTATATGCATCATGGAGTCGA 22267246 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||||||| | ||| | || |||| | ||||| ||||||| Sbjct 22267247 GTCCAGGCCGACCTCAACTGTATGCAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 22267304 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || |||||| || || ||| | Sbjct 22267305 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAATCTGGAAATTGTCAGGA 22267364 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| || | ||| | |||| | || ||||| | || || | | Sbjct 22267365 AACTCAAGTCATTAATGGGAGAAAACAACCTAGAAACTGAGAAAATGCCATCCAAT---A 22267421 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AGGTGACA--GACACACTGT---ACCCT---A 108153 ||||| | | |||||| | | ||| || || | | | ||| || || | Sbjct 22267422 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTTAATGGAAAGCTGACAAACACTGGGA 22267481 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | ||| ||| | ||||| | ||| | ||| |||| |||| | ||||||| Sbjct 22267482 CTGACAAAATGCAA---CCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGCGCCTATT 22267535 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA-AATCCCAAAGACTG 108272 | |||| | | | | ||| | | || |||| || | ||||| |||| | Sbjct 22267536 TCGTGGTCAGTAGGAATTATGTGGAGTACGTGCTAGAGAATGAAAGAATCCAAAAGTTTA 22267595 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| |||||||| || ||||| || || | ||||||||||| ||||| | Sbjct 22267596 -TGGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG- 22267653 Query 108333 GCTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACAT 108388 | ||| || | | || ||||| | || ||||| ||||| |||| || ||||| Sbjct 22267654 GATCCCTGAAGTCCCAGGCTCACTGCCCTTAAGCCAT---AAGTACGACATGTCCGACAT 22267710 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 | ||| || || ||| | ||||||||||||||| || || ||||| || ||| || Sbjct 22267711 GCATGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGC 22267770 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || |||||||| ||| ||||| | || | || ||| || || || || Sbjct 22267771 CCCCTACCCACCCTGCAATGGTGTCCATGTACGTTCCGTGTGTGTTTTTGGAGCAGGTGA 22267830 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||||||| || || || || ||| | || || |||||||||||| Sbjct 22267831 CTTGAACTGGATGCTGCACAAGCACCACTTATTTGCCAACAAGTTTGAC 22267879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347990367583452