Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7796 127 2e-24 seq10551 118 8e-22 >seq7796 Length=1511589 Score = 127 bits (140), Expect = 2e-24 Identities = 350/532 (66%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 ||| ||| |||| || || || ||||| ||||| |||| ||| || || ||| | Sbjct 1339828 AGAAGGGTATTTAGGCCCAGTTTATGGCTTTCAGTGGAAGTCTTTGGGGGCAGAAGACAA 1339769 Query 20274 TGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTT 20333 || ||| | || |||| | || ||||||| ||| ||| | || || || | | Sbjct 1339768 AGATATGTATTCAGATTACTCAGGTCAAGGAGCAGACCAACTGCACAAGGTGACACAC-- 1339711 Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393 ||| ||||| ||||| | ||||||||||| || | || | ||||| | |||||| | Sbjct 1339710 AATCAAAACCAACCCTGATGACAGAAGAATCATCCTGTGTTCTTGGAATCCAAAAGATTT 1339651 Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453 |||| ||||| | |||| ||||||| || ||||| | || || | || | ||| Sbjct 1339650 TCCTTGCATGGCCCTACCTCTGTGTCATACCCTTTGCCAGCTCTATGTGGTGAACAGTGA 1339591 Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513 |||| || || |||| | | || || || ||||| || ||||| || ||||| | Sbjct 1339590 GCTGTCCTGCCAGCTGTACAAGAGGTCAGCAGACATGGGCCTAGGTGTGCCCTTCAACGT 1339531 Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGA 20573 ||| | || | ||||| | || ||||||||||| | |||| | || | ||||| Sbjct 1339530 TGCCAAATAGTCCCTGCT--CCTACATGATTGCACACATCACAG-CCTGAAGCCAGGTGA 1339474 Query 20574 CTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATT 20633 ||| | | | | | | | || || |||| || ||||| | |||| | ||| | Sbjct 1339473 CTTTTTACTCTCTTTGACATAGGCACACATTTTTCTGAATCACACTGAACTGCTGAAAAT 1339414 Query 20634 ACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGA 20693 ||| | ||| |||||| | ||||||| || | || | ||| ||| | Sbjct 1339413 GCAGCTTTGTCGAGAACCAAGGCCTTTCCCAAAGCTCCAAATCCTTTGAAAAGTTGA--C 1339356 Query 20694 TATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745 || || || ||||| ||||| || ||| | | ||||| |||||||| ||| Sbjct 1339355 AATCAATGACTTTAAGGCTGAAGACTTTCAGATTGAAGGGTATAATCCTCAT 1339304 >seq10551 Length=27482606 Score = 118 bits (130), Expect = 8e-22 Identities = 271/407 (67%), Gaps = 1/407 (0%) Strand=Plus/Plus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || |||||||| ||| || |||| ||||| | ||| |||||||| || ||||| Sbjct 11321508 GAAGGGGATTTTCATCCAGTTAATGGCTTTCAGTAGAGGCATTTTGGGGCAGAATACAAA 11321567 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 || ||||| || |||||| | | |||| |||||| ||| | |||| | | | || || Sbjct 11321568 GATATGAATTCAGATTATTCTAGTCAAGCAGTAGACCAACTGAAAAAGATAACTCATATA 11321627 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 || || || ||||| | |||||||||||||| | || || ||||| | ||| || | Sbjct 11321628 ATCAACACCAACCCTGATGACAGAAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTT 11321687 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454 ||| | |||| || || ||| |||| || ||| || || || | ||| | | Sbjct 11321688 CCTCTCATGGTCTTATCTGCATATCATGCTCTTTGCTCATCCTATGTGGAAAATGGTAAG 11321747 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 |||| || | | |||| || | | | || ||| || |||| | ||||| ||| Sbjct 11321748 CTGTCTTG-CCAGTGTACCAGAGGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATT 11321806 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574 || | || | || | || || ||||| |||| ||| || | | | ||||| Sbjct 11321807 GCCAACTACTCCTTGTTCACCTACATGATCACACAAATTATGGACCTGAGGCCAGGTGAT 11321866 Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA 20621 || || |||| | ||||| || || |||||||| ||||| || || Sbjct 11321867 TTTGTATACACTTTGGGAGATGCCCACATTTACCTGAATCACATTGA 11321913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864862122110