Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5818 111 2e-19 >seq5818 Length=23789964 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| ||| ||||| | Sbjct 4866334 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 4866275 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 4866274 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 4866215 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 4866214 CGACAACACGTTCTCC 4866199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| || ||||| || | ||||| || ||||||||||||||||| ||| Sbjct 4867726 GACATCACTCCCATCTTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCT 4867667 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| || || ||||| || |||||||||||| Sbjct 4867666 TCCAGTGAAATGTTCTCCATGAAGTCAAATGGATTT 4867631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481950088666640