Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4924 114 1e-20 seq2426 107 2e-18 seq65597 82.4 7e-11 >seq4924 Length=6499587 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| ||||| ||||| || |||||| | || || ||| Sbjct 3091051 TCAAA-ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAA 3090993 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || ||| ||||||||| | || || Sbjct 3090992 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCA 3090933 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | ||| Sbjct 3090932 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 3090873 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| ||||| ||||| || || ||||| || | ||||||||||| Sbjct 3090872 TACAACATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACGTCTGAGGGGCGG 3090820 >seq2426 Length=324192 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| ||||| || ||||| || || || || Sbjct 169862 ACCTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGTT 169921 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| | ||||| || ||||| |||||||||||||| || || Sbjct 169922 CCCAGGTTCTGCTGGTTGCTCTGCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTA 169981 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| || || || Sbjct 169982 CCTGTCTCAGTCTGAGACTCAATAATGGC 170010 >seq65597 Length=65395183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || || | | || || || Sbjct 13732941 ATGCAGATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 13732882 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| || | |||||| | ||| |||||||||||| | || | |||||| Sbjct 13732881 AACACCACTGATAACGTCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCAG 13732822 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| |||| || || || ||||||||| |||| ||| | ||| | || || ||| Sbjct 13732821 CAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAAC 13732762 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGG 31415 ||||| ||||| || ||||| || |||| ||| | ||| ||| Sbjct 13732761 ATTCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGGGGG 13732719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445400882696160