Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2426 134 2e-26 seq14121 111 2e-19 seq5818 111 2e-19 seq10551 84.2 3e-11 >seq2426 Length=324192 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 155631 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 155690 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 155691 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 155750 Query 62508 CTATTTCTAAGACCGTA 62524 |||||||| | ||| || Sbjct 155751 CTATTTCTTATACCATA 155767 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || |||||||| || | || || || || | ||| || || || || || || ||| Sbjct 166596 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 166655 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||||||||||||||| | |||||| | || || || || || ||||| ||||| Sbjct 166656 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 166715 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 166716 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 166775 Query 62808 TTATTAGA 62815 ||||| || Sbjct 166776 TTATTTGA 166783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 171209 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 171268 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| Sbjct 171269 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCA 171328 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 171329 AGGCTCCAGGTAAATAGC 171346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| |||||||| ||||| | || || | || | || || || |||| Sbjct 179363 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 179422 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 179423 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 179482 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 179483 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 179528 >seq14121 Length=32252759 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| |||| || |||||||||| || ||||||||||||| || Sbjct 4560770 GTTACTTTCTATGATGTATATATCATTCTACAAGCTTTTATACTGACTACTGCAGTAATT 4560711 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||| ||||| || ||||||||||| ||| ||| | |||| Sbjct 4560710 CTTGGTTTGACTGTATATACTCTGCAATCTAAAAGAGATTTCAGCAAATTTGGAGCAGG 4560652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 || |||||||||||||||||| | |||||| | | ||| ||| ||||| || | ||| Sbjct 4567123 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTTTTCAAGTTCTCTTAACTACAGTGACA 4567064 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349 ||||| | |||||||||||||| | || ||||||||| |||| || || Sbjct 4567063 TCTGCATTTTTTTTATACTTTGAGTCTATACGGACATTTGTACATGGAAG 4567014 >seq5818 Length=23789964 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 4866334 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 4866275 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| ||||||||||| | Sbjct 4866274 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 4866215 Query 33724 C 33724 | Sbjct 4866214 C 4866214 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4865337 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4865278 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || ||||||||||| | || || || ||||| |||||| Sbjct 4865277 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 4865232 >seq10551 Length=27482606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 20328013 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 20327954 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| | | || || ||||| | | || ||| || |||| Sbjct 20327953 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 20327905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629301165313440