Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq13090 145 7e-30 seq7796 91.5 1e-13 seq7792 89.7 4e-13 >seq13090 Length=34591212 Score = 145 bits (160), Expect = 7e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| ||| || || |||||||||||||||||||| || | Sbjct 25833566 TCAGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 25833507 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 25833506 GCACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 25833447 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 |||| || ||||| || | || || ||||| || ||||| Sbjct 25833446 CCACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCAT 25833404 >seq7796 Length=1511589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 20975 AAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCT 21034 |||||| || || |||||| |||| ||| || |||| || | || |||| || | Sbjct 1339470 AAAGTCACCTGGCTTCAGGCT-GTGATGTGTGCAATCATGTAGG--AGCAGGGACTATTT 1339526 Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| | ||| || || || || ||||||||||| || ||||||| ||||||||||||||| Sbjct 1339527 GGCAACGTTGAAGGGCACACCTAGGCCCATGTCTGCTGACCTCTTGTACAGCTGGCAGGA 1339586 Query 21095 CAGCTC 21100 |||||| Sbjct 1339587 CAGCTC 1339592 >seq7792 Length=927264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 |||| ||| || || || || || || |||||||| || || || ||||| ||| ||| Sbjct 794868 TAAATGTGTGCATCTCCTAAAGTATGTACAAAGTCACCTGGCTTCCGGCCCATGATGTGT 794927 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 | ||||| || | | |||| ||||||||||||||| || || | || ||||||| | Sbjct 794928 GTGATCATGTAGGAGGGCAGGGAGTAGCTGGCGATGTTGAAGGGTGCTCCCAGGCCCAGG 794987 Query 21066 TCGGCGGACCTCTGGTACA 21084 || || | |||||||| || Sbjct 794988 TCTGCTGGCCTCTGGTTCA 795006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427434003515040