Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5812 107 2e-18 seq4924 91.5 1e-13 seq3210 91.5 1e-13 seq10551 87.8 2e-12 >seq5812 Length=6624047 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| | |||||| ||||| || || Sbjct 3075809 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075750 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 3075749 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 3075690 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 3075689 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAAGTC 3075630 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3075629 TTCACGAAGATCTGCAT 3075613 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| | |||||| ||||| || || Sbjct 3076037 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075978 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 3075977 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3075918 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 3075917 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3075858 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3075857 TTCACGAAGATCTGCAT 3075841 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| | |||||| ||||| || || Sbjct 3076265 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076206 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 3076205 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076146 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 3076145 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076086 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3076085 TTCACGAAGATCTGCAT 3076069 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| | |||||| ||||| || || Sbjct 3076493 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076434 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 3076433 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076374 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 3076373 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076314 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3076313 TTCACGAAGATCTGCAT 3076297 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| || |||| |||||| ||||| || || Sbjct 3076721 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCG 3076662 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 3076661 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076602 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 3076601 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076542 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3076541 TTCACGAAGATCTGCAT 3076525 >seq4924 Length=6499587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||| | || | ||| | || |||||||| |||||||| ||||| Sbjct 3090819 GCCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 3090878 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || || ||| |||| || | ||||| || || || Sbjct 3090879 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 3090938 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| || || | | || | ||||| |||| ||||| Sbjct 3090939 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCAC 3090998 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| |||||||| Sbjct 3090999 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 3091046 >seq3210 Length=13039658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCA--TTGTGCTCGAGTCTTCGAGCTGTTTAC 139625 ||||||||||| || ||||| || ||| || |||| || | ||||| |||||||| | Sbjct 10166749 GTAGACTCTTTCTGGATGTTGTAGTCGGACAGGATGTG-TCCA-TCTTCCAGCTGTTTCC 10166806 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 ||| ||||||| | | ||||| || || ||||| ||||| || ||| || | Sbjct 10166807 TGGCAAAGATCAGCCTCTATTGATCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 10166866 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | || || | |||||| |||||| |||||| | ||| | ||||| ||||||| | Sbjct 10166867 CAACGTGCTCAATGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTCTTCTCGGTCAAGG 10166926 Query 139746 TTTTTACGAATATTTGCA 139763 | || ||||| || |||| Sbjct 10166927 TCTTCACGAAGATCTGCA 10166944 >seq10551 Length=27482606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAG 139609 |||| || | |||| ||| ||||| ||||||||||| || || || || | || | Sbjct 16152394 GCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCA- 16152336 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || || |||||| || |||| | ||||||||| ||||| || |||| || Sbjct 16152335 TCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTA 16152276 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| || |||| | ||| | ||| || ||| || ||||| | || | Sbjct 16152275 TTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATG 16152216 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||| | ||||| ||||| || ||||| Sbjct 16152215 GTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCAT 16152181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495657239921600