Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10551 98.7 9e-16 seq8729 84.2 2e-11 >seq10551 Length=27482606 Score = 98.7 bits (108), Expect = 9e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| |||||||||||| Sbjct 20340218 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATATTTTCC 20340159 Query 12923 ATAAAATCGAAAGGATTTT 12941 ||||||||||| ||||||| Sbjct 20340158 ATAAAATCGAAGGGATTTT 20340140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| |||| |||||||| || | Sbjct 20339377 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAATTCATTCCAATGAGG 20339318 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 20339317 CCAACTGGCAAGGCTTCTGTTAAAAA 20339292 >seq8729 Length=5610107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 5402 CAACGTGCACGATAGAGATGTACCTGTGAACGCTCATAACAGTGACGAAAAACATTCCAC 5461 || |||| || || | | |||||||| | ||| || | |||| || ||||| | | Sbjct 17153 CAGCGTGGACAATTGCCAGGTACCTGTCCAAGCTTATGAGGGTGATAAAGAACATGCTGC 17094 Query 5462 TGTAAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAAATTTCCAAATATCC 5521 || | || || | |||||||| ||||| || | || ||| | | | ||||||| | || Sbjct 17093 TGAAGAAGCCAATGTAATAAAAGCCAGAGACCACCTTGCACATTATAGTTCCAAACACCC 17034 Query 5522 ACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAATAACAGATCGGATA 5581 ||| || | |||||| ||| | ||||||||||| || | ||||| | ||| || || | Sbjct 17033 ACTCATAGAGCTGATAGTGTGTCTGAAATGGAAAGGAGAAGACAAAAAGCAGGTCAGACA 16974 Query 5582 TGGC 5585 ||| Sbjct 16973 GGGC 16970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430637840076396