Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10551 163 7e-35 seq5350 143 6e-29 seq2541 143 6e-29 seq4924 141 2e-28 seq13474 138 3e-27 seq7271 127 5e-24 seq65597 107 4e-18 seq7281 102 2e-16 seq4361 98.7 2e-15 seq65594 96.9 8e-15 seq2193 91.5 3e-13 seq14116 89.7 1e-12 seq14121 86.0 1e-11 seq2899 86.0 1e-11 >seq10551 Length=27482606 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| ||||| | || ||||| Sbjct 16152389 ACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 16152330 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| | || || || ||||||||||| ||| |||| |||| ||| Sbjct 16152329 AGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGG 16152270 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 16152269 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGGTCTTC 16152210 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| || || |||||||| ||| Sbjct 16152209 CCGGTAAGGGTTTTCACGAAAATCTGCATCTTG 16152177 >seq5350 Length=2239624 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| |||||||| ||||| || ||||| ||||| || ||| Sbjct 1454489 GTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTATATCCATCTTCCAGTTGCTTGCCA 1454430 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||| Sbjct 1454429 GCAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1454370 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | ||||||| |||| ||||| || || || ||||||| | |||| ||| Sbjct 1454369 ATATTTTCTTTTGTATTCGAGGGTTCAGTCTTGAGAGTGGTAGTCTTCTCCTTAAGAGTT 1454310 Query 104543 TTTACAAATATCTGCATTTTGTGTACAGT 104571 || ||||| ||||||||||| ||||| Sbjct 1454309 TTCACAAAAGTCTGCATTTTGGTGACAGT 1454281 >seq2541 Length=1506631 Score = 143 bits (158), Expect = 6e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || || ||||| | |||||||| | || | |||||||| ||||| || | Sbjct 494149 TGTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGTACGTCCGTCTTCCAGTTGCTTGTC 494208 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||| | || || || ||||||||||| ||||||| |||||||| ||||| || || Sbjct 494209 AGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGCCTT 494268 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||||||||| ||| | ||||| ||||| || || | | ||| || ||||| || Sbjct 494269 TACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGACTTTCCCGTAAGGGT 494328 Query 104542 TTTTACAAATATCTGCATTTTG 104563 ||| ||||| |||||||| ||| Sbjct 494329 TTTCACAAAAATCTGCATCTTG 494350 >seq4924 Length=6499587 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || ||||| ||||| | || ||||| || || || || Sbjct 3090850 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3090909 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || ||||| |||||||| ||||| || || Sbjct 3090910 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 3090969 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || || || || ||||| || || || || Sbjct 3090970 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3091029 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||||||| Sbjct 3091030 TTCACGAAGATTTGCATTTTG 3091050 >seq13474 Length=40992597 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||| || |||||||| | || | || ||||| ||||| || ||| Sbjct 16257472 GTGGACTCCTTTTGAACGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCA 16257413 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| | | || || ||||||| ||| |||||||| |||||||| ||||| || ||| Sbjct 16257412 GCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 16257353 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||||||||| ||| | || ||| ||||| || | |||||||| || |||| ||| Sbjct 16257352 ACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAATGATAGTCTTCCCTATAAGGGTT 16257293 Query 104543 TTTACAAATATCTGCATTTTGTGTACAGT 104571 || | || |||||||| ||| | |||| Sbjct 16257292 TTCATGAAAATCTGCATCTTGGCTGCAGT 16257264 >seq7271 Length=14933599 Score = 127 bits (140), Expect = 5e-24 Identities = 149/201 (74%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| ||||| | || |||| | ||| | ||||| ||||| || ||| Sbjct 9022800 GTAGACTCTTTTTGAATGT---AGCCAGACAAAGTATGTTCATCTTCCAGTTGCTTGCCA 9022856 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| | || || || ||||||||||| || ||||| ||| |||| ||||| || ||| Sbjct 9022857 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCTTCCTTACCCTGGATCTTGGCCTTT 9022916 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||| || || || ||||||||||| || || || ||||| || |||| ||| Sbjct 9022917 ACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGAGTGATGGTCTTCCCCATAAGGGTT 9022976 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| ||| |||| ||| Sbjct 9022977 TTCACAAAAATCCGCATATTG 9022997 >seq65597 Length=65395183 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||| || ||||| | | ||| || || ||||| || Sbjct 13732745 GTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTCCAGCTGTTTGCCC 13732804 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||| | || || ||||| || || | || || ||||| Sbjct 13732805 GCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCGGATTTTAGCTTTG 13732864 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || ||| | || || || |||| ||||||| ||||| || | ||||| Sbjct 13732865 ACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTTGCCCATCAGTGTC 13732924 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 13732925 TTCACGAAGATCTGCAT 13732941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||||| || || | || || | || || ||||| | Sbjct 16165085 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 16165144 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || ||||| |||||||| | ||| |||||||| || Sbjct 16165145 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTGTATCATCACTGTACAATGTTTACATTA 16165204 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| ||||||| ||||||| Sbjct 16165205 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 16165241 >seq7281 Length=49932807 Score = 102 bits (112), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || |||||||| ||||||||||| || ||||| || || || |||||||| || Sbjct 21673420 TGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGTTGTTTGCC 21673479 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||||| || || || | ||| | || || | ||| || || || || ||||| Sbjct 21673480 CACAAAAATCAGATCCTACTGGTTAGGTAGGATGCCCTTTTTGTCTTGGATTTTAGCTTT 21673539 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| ||| ||| || || || | | || |||| || ||||| ||||| || || Sbjct 21673540 GACATTCTCTGTGGTGTCACTGGGCTTGATCTTGAGTGAGATGGTCTTGCCAGTCAGAGT 21673599 Query 104542 TTTTACAAATATCTGCAT-TTTGTGT 104566 || ||| | |||||||| | ||||| Sbjct 21673600 ATTCACAGAAATCTGCATCTCTGTGT 21673625 >seq4361 Length=21435851 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||||||||| || |||| | || | || || ||||| || Sbjct 2916428 GTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCCAGCTGTTTGCCC 2916487 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||| | || | || || ||||| || || || || || || || | || ||||| Sbjct 2916488 GCAAAACTCAGACCCTCCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGGTTTTAGCTTTG 2916547 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| || || || | ||||| |||| || ||||| || | || || Sbjct 2916548 ACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTGCCCATCAGGGTC 2916607 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 2916608 TTCACAAAGATTTGCAT 2916624 >seq65594 Length=21052295 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||| ||||||||||| || | | | | || | || || |||| || |||||| Sbjct 7854629 TCTTTCCAGATATTATAGTCTGAAAAACTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAA 7854570 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 ||||| | ||| || ||||| | || | || || || || || || ||||| || ||| Sbjct 7854569 ATTAGACGCTGCTGGTCAGGTGTGATGCTCTCCTTGTCTTGGATTTTAGCTTTGACGTTT 7854510 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || |||||| || || || ||||| ||||| || ||||| || || || | || ||| Sbjct 7854509 TCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGAATCTTGACA 7854450 Query 104549 AATATCTGCATTT 104561 || || |||| || Sbjct 7854449 AACATTTGCAATT 7854437 >seq2193 Length=10573696 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || |||||||| ||||| |||| || || | | || ||||| || || ||||| || Sbjct 4126981 GACTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACA 4126922 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTAT-TCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 || || |||||||||| | || || || | |||||| || || ||||| || || || Sbjct 4126921 AAGATCGGCCTCTGTTGGTTGGG-GGAATGTTCTTCTTG-TCTTGGATCTTGGCCTTGAC 4126864 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 ||| || | ||| | ||| | || || || || || || ||||||||||| | || || Sbjct 4126863 ATTCTCGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTT 4126804 Query 104545 TACAAATATCTGCA 104558 || || ||||||| Sbjct 4126803 CACGAAGATCTGCA 4126790 >seq14116 Length=421059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| |||||||| |||||| ||| |||| |||||||||||||| Sbjct 304658 TTGCCAGCAAAGATTAT--TCTGTTGACCAGGAGAAATTTCTTCCTTATCCTGAATCTTA 304715 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || | ||||||||| | |||| | ||| ||| |||| || ||||| ||||| | | Sbjct 304716 GCCTGTACATTTTCCATTGTAT-TCGAGGTTTCAGCCTCGAGAGTAATGGTCTTCTCCCT 304774 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 ||| |||| ||||| || || || || Sbjct 304775 AAG-CTTTTCACAAAAATTTGTATCTT 304800 >seq14121 Length=32252759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || | || ||| | || || || | || ||||| | Sbjct 18962451 GTGGATTCTTTCTGGATGTT-TGGTTAGACAAGGTGTGCCCATCATTCAGGTGTTTCCTG 18962393 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| | ||||| || || | | ||||||| | ||| | || | Sbjct 18962392 GCAAAGATCAACCTCTGCTAGTCAGGGGGAATGCATGCTTTATCTTAGATCGTGGCCTCG 18962333 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| | ||||| ||||| || || || || ||||||||||| | || Sbjct 18962332 ACATTCTCAATGGTGTTACTAGGCTCTACTTCCAGGGTGATGGTCTTACCAGTTAAGGTC 18962273 Query 104543 TTTACAAATATCTGCAT 104559 |||| || |||||||| Sbjct 18962272 TTTATGAAGATCTGCAT 18962256 >seq2899 Length=5183325 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG-ATCAGGAGGTATTCCTTC 104460 || ||||| ||||| || ||| |||| || | || || || ||||| || | | ||| Sbjct 580434 CCATCTTCCAGTTGCTTGCCATCAAAGATCAATCTTTGCTGCATCAGAAGAAACCCATTC 580493 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 ||||||| |||||| || ||||||||||||| ||||| ||||| || || || | Sbjct 580494 CTTATCCTAAATCTTGGCCTTTACATTTTCTATTGTATCCAACGGTTCAACTTCAAGAGC 580553 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | | ||| ||||| | || |||||||| Sbjct 580554 GATGGTCTTCTCCGAAAGGGTTTTCATGAAAATCTGCAT 580592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150430679149384