Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq14102 116 4e-21 >seq14102 Length=4978252 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||| |||||||||||||| || | Sbjct 325765 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTTTACCTGGAGGAGGTGA 325824 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| | |||| ||| || ||| | ||||||||||| || || || | Sbjct 325825 TGCCCCAGGCTGAGAGCCAGGGCCCAGACATCAAGAAACACGTGAACTCCCTTGGGGAAA 325884 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 325885 AGCTGAAGACACTCAGGCT 325903 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 327969 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 328028 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 328029 TAGAAGCCTACATGACAATGAAGAT 328053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546930362740480