Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3928 174 2e-38 seq11115 109 8e-19 >seq3928 Length=19980961 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | |||||| |||||||||||| || |||| || ||||| |||||| Sbjct 5933863 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 5933804 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || || | ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 5933803 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAC 5933744 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || ||||||||||| | | Sbjct 5933743 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 5933684 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 5933683 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 5933635 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || ||||||| || || || |||| || | Sbjct 5932687 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 5932628 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 5932627 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 5932568 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 ||||||||||||| ||||| ||||| ||||| Sbjct 5932567 GGAGGGCTGTCAACCAAATGTGATCTGGCTGAA 5932535 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 5933287 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 5933228 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 5933227 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 5933168 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || || | || | || ||| ||||||||||| Sbjct 5933167 AGGGACAAACTTTCTTCTTAGGAGAAATTTTTCCACAA 5933130 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 5934473 CTTACCCTGCCAGCAATTTGCCTACTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 5934414 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACT-TTGTTTTATCAATCTC 9440 | | |||||| |||||||| | || | ||||| |||| ||| | | || |||| Sbjct 5934413 AGTAATATGGAGTTGTTGTAGATAAACTGTCGATAGTCGTACTCTTGGTCT-TCGATCTG 5934355 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 5934354 AAAGGTGTCAGGCAAAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 5934295 Query 9501 ATTTTGGTACTGGAA 9515 |||||||||||||| Sbjct 5934294 GTTTTGGTACTGGAA 5934280 >seq11115 Length=7242935 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || || || ||||| | |||||||| |||| || |||||| ||| ||| |||| Sbjct 46447 TCGCCACCAAATGTGCTTGACTTCCAGTACTCCGGAGAACAGATGGGATTCCCCAAGAGG 46506 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || ||||||||||| |||||||| | || | || || || || ||||||| ||| ||| Sbjct 46507 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTTTCCCCAAAGATGGAGTTTGGA 46566 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGG 8941 || ||| || | | | ||| | || ||||||| || || ||||||||||| | Sbjct 46567 TGGCACTTCTCAAGAAGCAGTCCCGGATAGAACTCCAAGGCATCAATGTCTCCGTACAAC 46626 Query 8942 GCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || | || || || || |||||||||||| Sbjct 46627 TCCTCCAACTCAGCTGCCATCTCCTTTTCTCCT 46659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707943827377120