Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2426 140 4e-28 seq5818 123 3e-23 seq10551 84.2 3e-11 >seq2426 Length=324192 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 155631 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 155690 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 155691 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 155750 Query 62457 CTATTTCTAAGACCGTA 62473 |||||||| | ||| || Sbjct 155751 CTATTTCTTATACCATA 155767 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 171209 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 171268 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| Sbjct 171269 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCA 171328 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 171329 AGGCTCCAGGTAAATAGC 171346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 166596 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 166655 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 166656 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 166715 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 166716 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 166775 Query 62757 TTATTAGA 62764 ||||| || Sbjct 166776 TTATTTGA 166783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||| ||||| | || || || || | || || || |||| Sbjct 179363 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 179422 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 179423 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 179482 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 179483 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 179528 >seq5818 Length=23789964 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 4866334 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 4866275 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||||||||| | Sbjct 4866274 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 4866215 Query 33446 C 33446 | Sbjct 4866214 C 4866214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4865337 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4865278 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || ||||||||||| | || || || ||||| |||||| | ||| || || Sbjct 4865277 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAACCGCTC 4865218 Query 33684 CGCC 33687 | || Sbjct 4865217 CACC 4865214 >seq10551 Length=27482606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 20328015 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 20327956 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | | || || ||||| | | || ||| || |||| Sbjct 20327955 AATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 20327905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622436398869680