Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2426 98.7 3e-15 seq5818 87.8 5e-12 >seq2426 Length=324192 Score = 98.7 bits (108), Expect = 3e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| ||||| |||||||||||||| | Sbjct 171355 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGATATCTTTGAGTTTCTTGATTTA 171296 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| |||||||| ||| |||||| | || || |||| ||| |||||| || Sbjct 171295 AAGAAGAACACAGGAAAAGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 171236 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 171235 CCGGATCTCTTCATGAAACGAGTGGAG 171209 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||| || || || |||| ||||||||| || || || ||| Sbjct 170028 GCTCAGCAGCTTTGGTACGCCATTATTGAGTCTCAGACTGAGACAGGTACCCCATACATG 169969 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || || |||||||||| |||| || ||||| | Sbjct 169968 CTCTACAAAGATTCCTGTAATCGGCAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 169909 Query 364231 AGCAACCTATGTACCGAGAT 364250 |||||||| ||||| || || Sbjct 169908 AGCAACCTGTGTACAGAAAT 169889 >seq5818 Length=23789964 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || ||||| || ||||||||||| | ||| | Sbjct 4866202 GAACGTGTTGTCGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 4866261 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 4866262 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATT 4866321 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 4866322 AGCAGAGATGAGG 4866334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302258164697636