Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04]
65,598 sequences; 1,985,975,446 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2426 98.7 3e-15
seq5818 87.8 5e-12
>seq2426
Length=324192
Score = 98.7 bits (108), Expect = 3e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897
||||| |||||||| || || |||||| ||| ||||| |||||||||||||| |
Sbjct 171355 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGATATCTTTGAGTTTCTTGATTTA 171296
Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957
||| ||||| |||||||| ||| |||||| | || || |||| ||| |||||| ||
Sbjct 171295 AAGAAGAACACAGGAAAAGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 171236
Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984
| || | || ||||| || ||||||
Sbjct 171235 CCGGATCTCTTCATGAAACGAGTGGAG 171209
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||| || || || |||| ||||||||| || || || |||
Sbjct 170028 GCTCAGCAGCTTTGGTACGCCATTATTGAGTCTCAGACTGAGACAGGTACCCCATACATG 169969
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || || |||||||||| |||| || ||||| |
Sbjct 169968 CTCTACAAAGATTCCTGTAATCGGCAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 169909
Query 364231 AGCAACCTATGTACCGAGAT 364250
|||||||| ||||| || ||
Sbjct 169908 AGCAACCTGTGTACAGAAAT 169889
>seq5818
Length=23789964
Score = 87.8 bits (96), Expect = 5e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| || | || ||||||| || ||||| || ||||||||||| | ||| |
Sbjct 4866202 GAACGTGTTGTCGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 4866261
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||
Sbjct 4866262 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATT 4866321
Query 22609 AGCCGAGATGAGG 22621
||| |||||||||
Sbjct 4866322 AGCAGAGATGAGG 4866334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302258164697636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |