Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq65591 87.8 2e-12 seq4924 86.0 5e-12 >seq65591 Length=11041708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || | |||||||||||||||| | ||| ||||| ||| | ||| Sbjct 2177497 GATAAGGAAGGAATTCCTCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAA 2177438 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | | | || | ||||| | ||||||||| ||||| ||| | ||| | |||||| Sbjct 2177437 GATGGACATATCTTGTCTGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 2177378 Query 115499 AGA 115501 ||| Sbjct 2177377 AGA 2177375 >seq4924 Length=6499587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || || || || || || || ||||| ||| | ||| ||| || Sbjct 3091049 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 3090990 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| ||| | || || || || ||||| |||||| ||||| || Sbjct 3090989 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGAC 3090930 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | ||||||| | || | | ||||| Sbjct 3090929 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 3090870 Query 115463 AACATTCAAAAAGAGTCTAC 115482 |||||||| |||||||| || Sbjct 3090869 AACATTCAGAAAGAGTCGAC 3090850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425003947839760