Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2058 105 4e-18 seq13474 96.9 2e-15 seq10551 95.1 8e-15 seq5812 91.5 1e-13 seq65591 87.8 1e-12 seq13480 87.8 1e-12 seq847 84.2 1e-11 seq4924 82.4 5e-11 >seq2058 Length=1152404 Score = 105 bits (116), Expect = 4e-18 Identities = 81/96 (84%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||| ||| |||||||||||||||||| |||||||| ||||| || |||||| Sbjct 181529 TAAGCCCATTCGCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCC 181588 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||||| ||||||||||||||||||| Sbjct 181589 TTCATCCAGTCATGCGTGTCACTAATTAGATGACGA 181624 >seq13474 Length=40992597 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||| | | |||||||||| ||||||||||| ||||| |||||||| |||| | || Sbjct 16257488 CAACGCAACATGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAGGTACGTCCATC 16257429 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| | | | ||| ||||| || || | ||||| || || Sbjct 16257428 TTCCAGTTGCTTGCCAGCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTCCTTATC 16257369 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || ||| || | |||||| || | | ||||| Sbjct 16257368 CTGGATCTTGGCCTTTACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAATGATAGT 16257309 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | | |||||||| ||| |||||||| || Sbjct 16257308 CTTCCCTATAAGGGTTTTCATGAAAATCTGCATCTT 16257273 >seq10551 Length=27482606 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38104 GCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGT 38163 ||||||| | |||||| ||| |||||||||||| ||||| ||||||| | |||| | | Sbjct 16152394 GCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCAT 16152335 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| | || | ||| ||||| | || | |||| || | Sbjct 16152334 CTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTAT 16152275 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | ||||| |||||| || | || || | Sbjct 16152274 TCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGG 16152215 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || | |||||||||||| |||||||| || Sbjct 16152214 TCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATCTT 16152178 >seq5812 Length=6624047 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| || | |||| || || ||| ||| || || || ||||| || || Sbjct 3076752 ACCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 3076693 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| |||| || | || ||||||||||| || || | || || || | ||| Sbjct 3076692 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3076633 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| || |||| || || || | || || Sbjct 3076632 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 3076573 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 3076572 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | |||| || |||||| ||| || || || ||||| || || Sbjct 3076067 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076008 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||||||||| || || | || || || | |||| Sbjct 3076007 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3075948 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || |||| || || || | || || Sbjct 3075947 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3075888 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 3075887 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | |||| || |||||| ||| || || || ||||| || || Sbjct 3076295 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076236 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||||||||| || || | || || || | |||| Sbjct 3076235 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076176 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || |||| || || || | || || Sbjct 3076175 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076116 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 3076115 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | |||| || |||||| ||| || || || ||||| || || Sbjct 3076523 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076464 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||||||||| || || | || || || | |||| Sbjct 3076463 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076404 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || |||| || || || | || || Sbjct 3076403 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076344 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 3076343 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 >seq65591 Length=11041708 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | | |||||| | |||||||||| |||||||||||| ||||||||| Sbjct 2177362 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAG 2177421 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || | || || | ||| || || ||||| || || | ||| |||| | | Sbjct 2177422 ACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAG 2177481 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| || || ||| || | | |||||| ||||| Sbjct 2177482 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAA 2177541 Query 38269 CTTCTAATGTAATAGTTTTACC-CGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | | | ||||| || || || | | | ||||||||| || |||||||| || Sbjct 2177542 CCTTGAGAGTAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTT 2177594 >seq13480 Length=7479994 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA-----GGGGGTAATCTCGT 25956 |||||||||||||||||| ||||||| || |||||| |||| | || |||||| | Sbjct 2163351 AAGCCCGTTCCCTTGGCTATGGTTTCACTGGATAGTGGATAAGAACAGTGGGAATCTCAT 2163410 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || ||| |||||||||||| Sbjct 2163411 TCATCCATTCATGAGCATCAGTAATTAGATGAC 2163443 >seq847 Length=4940370 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 |||||||||||||||||||| |||||||| |||||||||||| ||||||| || | | Sbjct 2729068 TCTCTTCAAAGTTCTTTTCAGCTTTCCCTTACGGTACTTGTTGACTATCGGCCTTGTGTC 2729127 Query 20010 AATATTTAGCCTTA 20023 |||||||||||| Sbjct 2729128 GGTATTTAGCCTTA 2729141 >seq4924 Length=6499587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| ||| | |||| || || || ||| || ||||| ||||||||||| Sbjct 3090820 CCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 3090879 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | |||| Sbjct 3090880 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3090939 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || ||||||||||| | || || | ||| ||| Sbjct 3090940 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 3090999 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| |||||||| || ||||| || Sbjct 3091000 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 3091049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334679417877938