Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5812 113 4e-20 seq4361 93.3 4e-14 >seq5812 Length=6624047 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||||||||||||||| ||||||| | || |||||| | Sbjct 3075610 ACAATGCAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 3075669 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | ||| || ||| ||||| || || || || |||||| Sbjct 3075670 AGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 3075729 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || || | ||||| | ||||| | ||| ||| Sbjct 3075730 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTAC 3075789 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| ||||| || || | || || | || ||||| || Sbjct 3075790 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3075839 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | Sbjct 3076525 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076584 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 3076585 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3076644 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | ||||| || ||| ||||| Sbjct 3076645 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 3076704 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| ||||| || || Sbjct 3076705 ATCCAGAAAGAGTCCACCCTGCA 3076727 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | Sbjct 3075841 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3075900 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 3075901 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3075960 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | ||||| | ||| ||||| Sbjct 3075961 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 3076020 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || ||||| || Sbjct 3076021 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076067 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | Sbjct 3076069 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076128 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 3076129 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3076188 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | ||||| | ||| ||||| Sbjct 3076189 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 3076248 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || ||||| || Sbjct 3076249 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076295 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | Sbjct 3076297 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076356 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 3076357 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3076416 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | ||||| | ||| ||||| Sbjct 3076417 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 3076476 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || ||||| || Sbjct 3076477 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076523 >seq4361 Length=21435851 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||| || || |||||||| ||| || || | | Sbjct 2916624 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 2916565 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || ||||| || || || |||||||| Sbjct 2916564 GACACCATCGAAAACGTCA---AAGCTAAAACCCAA-GACAAGGAGGGCATCCCACCTGA 2916509 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | | |||||| |||||||| | || ||| |||||| || || Sbjct 2916508 CCAGGAGGGTCTGAGTTTTGCGGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTA 2916449 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||| || ||||| ||||| || || || |||||| Sbjct 2916448 TAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTA 2916412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432981564826370