Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5812 118 9e-22 seq4924 102 7e-17 seq65597 93.3 4e-14 seq10551 89.7 4e-13 seq4361 87.8 2e-12 seq65594 82.4 6e-11 >seq5812 Length=6624047 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| |||||||| || |||| || || ||||| ||| | Sbjct 3075613 ATGCAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3075672 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 3075673 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 3075732 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || || |||||| ||||||| |||||| Sbjct 3075733 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 3075792 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 3075793 ATCCAGAAAGAGTCCACC 3075810 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 3076524 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076583 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 3076584 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076643 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || |||||| | ||||| ||||| Sbjct 3076644 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAA 3076703 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| |||||| | || | || | || ||| | |||||| Sbjct 3076704 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGGGGAGGT 3076752 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 3075840 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3075899 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 3075900 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3075959 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || |||||| ||||||| ||||| Sbjct 3075960 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076019 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 3076020 CATCCAGAAAGAGTCCAC 3076037 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 3076068 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076127 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 3076128 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076187 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || |||||| ||||||| ||||| Sbjct 3076188 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076247 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 3076248 CATCCAGAAAGAGTCCAC 3076265 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 3076296 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076355 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 3076356 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076415 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || |||||| ||||||| ||||| Sbjct 3076416 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076475 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 3076476 CATCCAGAAAGAGTCCAC 3076493 >seq4924 Length=6499587 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || ||||||||| Sbjct 3091052 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAA 3090993 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || ||||| || || || || Sbjct 3090992 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCA 3090933 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 3090932 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 3090873 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 ||||||||||| ||||| || ||| Sbjct 3090872 TACAACATTCAGAAAGAGTCGACC 3090849 >seq65597 Length=65395183 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| | ||||||||| || || |||| || || || |||| || |||| Sbjct 13732865 TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCAGCAGTGTCTGATTTTTG 13732806 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | ||||||||| | ||||| | ||||| |||| || ||||||||||| ||||| |||| Sbjct 13732805 CGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAACATTCAGAAAGAGTCCA 13732746 Query 22415 C 22415 | Sbjct 13732745 C 13732745 >seq10551 Length=27482606 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | ||||| || || ||||||| || || ||| || Sbjct 16152178 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCC 16152237 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||| | || || | || || || || | ||||| | ||||| || ||| Sbjct 16152238 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGAT 16152297 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || | ||||| ||||| || | || ||| || || | || || ||| Sbjct 16152298 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 16152357 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 ||||||||||| || ||||| | ||| | || |||| Sbjct 16152358 AACATTCAAAAGGAGTCCACGCTTCATCTTGTGTTGC 16152394 >seq4361 Length=21435851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| || || | | || || || |||| | || || | ||| Sbjct 2916626 AGATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCA 2916567 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || | ||||| |||| |||||||||||||| || ||||| || | Sbjct 2916566 GTGACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACC 2916507 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | | |||| | ||||| ||||||||| | ||| || |||||| ||| || || | Sbjct 2916506 AGGAGGGTCTGAGTTTTGCGGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTATA 2916447 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || ||||| |||||| | || || || Sbjct 2916446 ATATCCAGAAAGAGTCCACCCTGCACTTGGT 2916416 >seq65594 Length=21052295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| | ||||||| ||||| || | | | || || || || |||| || || || || Sbjct 7854432 TGTAGAATTGCAAATGTTTGTCAAGATTCTGACGGGCAAGACCATCACACTCGAGGTCGA 7854491 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| |||||| || | ||||| ||||| |||||||||||| | || |||| Sbjct 7854492 GCCCAGTGATACCACTGAAAACGTCAAAGCTAAAATCCAAGACAAGGAGAGCATCACACC 7854551 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 || || || ||||| || ||||| ||| ||||| | ||| || ||||| Sbjct 7854552 TGACCAGCAGCGTCTAATTTTTGCAGGCGAACAGCTGGAGAATGGCCGCA 7854601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419392437694870