Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5812 185 2e-41 seq4924 163 5e-35 seq2193 145 1e-29 seq10551 116 7e-21 seq4361 111 3e-19 seq65597 102 2e-16 seq7793 95.1 2e-14 seq3210 93.3 8e-14 seq12046 89.7 9e-13 seq10170 84.2 4e-11 >seq5812 Length=6624047 Score = 185 bits (204), Expect = 2e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || |||||||| || | ||| ||||| Sbjct 3075821 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3075762 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| ||||||||||| Sbjct 3075761 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 3075702 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||||||| |||||||||||| ||| | || || |||| ||||||||| || Sbjct 3075701 ATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 3075643 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||| ||||| ||||||||| Sbjct 3075642 ACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 183 bits (202), Expect = 6e-41 Identities = 168/210 (80%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || |||||||| || | ||| ||||| Sbjct 3076049 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3075990 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| |||||||| || Sbjct 3075989 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3075930 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||||||| |||||||||||| ||| | || || |||| ||||||||| || Sbjct 3075929 ATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 3075871 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 3075870 ACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 183 bits (202), Expect = 6e-41 Identities = 168/210 (80%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || |||||||| || | ||| ||||| Sbjct 3076277 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3076218 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| |||||||| || Sbjct 3076217 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076158 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||||||| |||||||||||| ||| | || || |||| ||||||||| || Sbjct 3076157 ATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 3076099 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 3076098 ACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 183 bits (202), Expect = 6e-41 Identities = 168/210 (80%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || |||||||| || | ||| ||||| Sbjct 3076505 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 3076446 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| |||||||| || Sbjct 3076445 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076386 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||||||| |||||||||||| ||| | || || |||| ||||||||| || Sbjct 3076385 ATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 3076327 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 3076326 ACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||| | |||| ||| || ||||||||||| |||||||| || ||||| Sbjct 3076751 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 3076692 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| ||||| || || || || || ||||| || || Sbjct 3076691 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076632 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||||||||| ||| | || || Sbjct 3076631 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCAC 3076573 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | |||||| ||||| |||||||| Sbjct 3076572 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq4924 Length=6499587 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| || ||||| ||||| || || || | |||||||| Sbjct 3090838 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3090897 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || || ||||||||||| || || Sbjct 3090898 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 3090957 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| |||||||| | ||| ||||||| ||||||||| || Sbjct 3090958 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTG 3091017 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 3091018 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 3091050 >seq2193 Length=10573696 Score = 145 bits (160), Expect = 1e-29 Identities = 151/194 (78%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 |||||||| ||||| || || | ||| || | | ||||||||| | |||||| ||| | Sbjct 4126981 GACTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACA 4126922 Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || || | || ||||||| ||| |||||| | ||||||||| ||||| |||||||| Sbjct 4126921 AAGATCGGCCTCTGTTGGTTGGG-GGAATGTTCTTCTTGTCTTGGATCTTGGCCTTGACA 4126863 Query 68388 GCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 ||||||||||| |||| || || ||||||| ||||||||| || || || | |||||| Sbjct 4126862 TTCTCGATGGTGT-TGCTGGACTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTT 4126804 Query 68447 GACGAATATCTGCA 68460 ||||| ||||||| Sbjct 4126803 CACGAAGATCTGCA 4126790 >seq10551 Length=27482606 Score = 116 bits (128), Expect = 7e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68248 GCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCAT 68307 |||| || | || ||||||||||| ||||| ||||| || || || || || | |||| Sbjct 16152394 GCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCAT 16152335 Query 68308 CTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGT 68367 |||| | ||||| || || || | |||||||| || || || ||||| ||||||| | Sbjct 16152334 CTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTAT 16152275 Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 || ||||| ||||| || || || || || | ||| || || | ||||||| Sbjct 16152274 TCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGG 16152215 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| || ||||| |||||||| Sbjct 16152214 TCTTCCCGGTAAGGGTTTTCACGAAAATCTGCAT 16152181 >seq4361 Length=21435851 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| ||||| || ||| | || | |||| || Sbjct 2916416 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCC 2916475 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || | || | | ||||| ||||| ||||| ||||||||||| Sbjct 2916476 AGCTGTTTGCCCGCAAAACTCAGACCCTCCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 2916535 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || |||||| ||||||||||| | | || || |||||||| || Sbjct 2916536 GTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTG 2916595 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||| || || || ||||| Sbjct 2916596 CCCATCAGGGTCTTCACAAAGATTTGCAT 2916624 >seq65597 Length=65395183 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| || || || |||| || | | || || Sbjct 11098461 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGCAGCTGTCCTCC 11098402 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || | ||| || || || | || ||| | |||| ||| ||||||||||| | Sbjct 11098401 AGCTGTTTGCGGGCAAAAATCAGACACTGCTGGCCAGGTGAGATGTCTTCCTTGTCTCGG 11098342 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||| | || ||||||| ||| | | || || | |||||||| || Sbjct 11098341 ATTTTAGCTTTGATGTTGTCAGTGGTGTC-ACTGAACTTGACCTCAAGTGTGATGGTCTT 11098283 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| |||||||| Sbjct 11098282 GCCTGTCAGAGTCTTCACGAAGATCTGCAT 11098253 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| || ||||| || || ||||| || | || || Sbjct 13732733 ACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTCC 13732792 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| |||| ||||||||||||||| | Sbjct 13732793 AGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCGG 13732852 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| || |||||| | || | || || | || ||||| || Sbjct 13732853 ATTTTAGCTTTGACGTTATCAGTGGTGT-TACTGGGCTCGACCTTGTGTGTAATGGTCTT 13732911 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || ||||| ||||| |||||||| Sbjct 13732912 GCCCATCAGTGTCTTCACGAAGATCTGCAT 13732941 >seq7793 Length=19070987 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||||| ||| || || || ||||| || | | ||||| Sbjct 18919847 ACCAAGTGCAGAGTGGACTCTTGTTG----TTTTAGTCTGAGAGAGTGCAGCTGTCTTCC 18919792 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| ||||| ||||| ||||||||||| Sbjct 18919791 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 18919732 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || |||||| || ||||||| | || || || | | |||||| || Sbjct 18919731 ATTTTAGCTTTGACGTTTTCAGTGGTGTCACTGGGCTCGACCTCGAGTGCGATGGTCTTG 18919672 Query 68433 CC----CGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||| |||| || || |||||||| Sbjct 18919671 CCGCAATGTCAGGCTCTTCACAAAGATCTGCAT 18919639 >seq3210 Length=13039658 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| | |||| || || ||||||||||| | |||||||||||| || | Sbjct 10167158 CTTTCTGAATGTTGT---CGGACAGGGTGCTCCCATCTTCCAGCTGCTTCCCGGCAAAGA 10167102 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || || || ||||| || || ||||| || |||||||| ||| |||||||| || Sbjct 10167101 TCAGCCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTGGGCCTTGGCCTTGACATTCT 10167042 Query 68392 CGATGGT 68398 |||||| Sbjct 10167041 TGATGGT 10167035 >seq12046 Length=4097285 Score = 89.7 bits (98), Expect = 9e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| | ||| ||||| | ||||| || | ||||| | Sbjct 930665 ACCAGGTGCAGGGTGGACTCTTTCTCGATATTATAGACTGAGAGAGTTCGGCCATCCGCC 930606 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| | || | || | || | || || ||||| ||||| ||||||||||| Sbjct 930605 ACCTGTTCGCCCACAAAACTCAGACGATGCCAGTAAGGTGGGATGCCCTCCTTGTCTTGG 930546 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 || || || | |||| || ||||||| |||| || || || | |||||||| || Sbjct 930545 ATTTTAGCTTCGACGTTTTCAGTGGTGTC-ACTGAGCTCGACCTCAAGTGTGATGGTCTT 930487 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGC 68459 || || |||||||| || || |||||| Sbjct 930486 GCCTGTCAGGGTCTTCACAAAGATCTGC 930459 >seq10170 Length=1892184 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || |||||||||||||||| ||||| || ||||| || ||||| || Sbjct 363450 ACTAAGTGCAGGGTGGACTCTTTTTGGACATTATAGTCTGAGAGAGTATGGCCATCCTCC 363391 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || | || | || | ||| ||| ||| || || ||||||||||| Sbjct 363390 AGCTCTTTGCCTACAAAATTCAGACATTG-CAGTCAGGTTTGATACCCTCCTTGTCTTGG 363332 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 || || || ||||| || ||||||| |||| || || | | |||||||| | Sbjct 363331 ATTTTAGCTTTGACATTTTCAGTGGTGTC-ACTGAGGTCAACCTTTAGTGTGATGGTCCT 363273 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | |||||||| | || |||||||| Sbjct 363272 TCCCATCAGGGTCTTCAGAAAGATCTGCAT 363243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920866692672560