Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4924 98.7 8e-16 seq10551 82.4 6e-11 >seq4924 Length=6499587 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| | ||| || |||||| || || || || Sbjct 3090850 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3090909 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 3090910 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 3090969 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| ||| | || ||||||||||| || Sbjct 3090970 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3091029 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 3091030 TTCACGAAGATTTGCAT 3091046 >seq10551 Length=27482606 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | ||| || || |||||||||||||| || || |||||| ||| Sbjct 16152393 CAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 16152334 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| ||||| || ||||| || | || | || || || |||||||| |||| || | Sbjct 16152333 TTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATT 16152274 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| |||| | ||| | || || || ||| || || | || | || Sbjct 16152273 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGGT 16152214 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || ||||| || ||||||||||| Sbjct 16152213 CTTCCCGGTAAGGGTTTTCACGAAAATCTGCAT 16152181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419798512787976