Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7796 87.8 2e-12 >seq7796 Length=1511589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 20270 AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATAC 20329 ||||| || |||||| ||| || || || || | ||||||||| | ||||||| ||| Sbjct 1339516 AGGGACTATTTGGCAACGTTGAAGGGCACACCTAGGCCCATGTCTGCTGACCTCTTGTAC 1339575 Query 20330 AGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGA 20389 ||||| ||||| ||||||| || | ||||| | || || | ||||| | || Sbjct 1339576 AGCTGGCAGGACAGCTCACTGTTCACCACATAGAGCTGGCAAAGGGTATGACACAGAGGT 1339635 Query 20390 AGCGCCAT-CAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTG 20448 || ||||| ||| || || || || ||||| | ||||| ||||||||||| || | Sbjct 1339636 AGGGCCATGCAAGGAAAA-TCTTTTGGATTCCAAGAACACAGGATGATTCTTCTGTCATC 1339694 Query 20449 CGGATTATTTTTTATTAAAT-CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTAT 20507 || || |||| ||| | ||| ||| || |||||| || || |||| | Sbjct 1339695 AGGGTTGGTTTTGATTGTGTGTCACCTTGT---GCAGTTGGTCTGCTCCTTGACCTGAGT 1339751 Query 20508 AGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAG 20567 | || | || | || || | ||||| || | ||||||| || || ||||| | Sbjct 1339752 AATCTGAATACATATCTTTGTCTTCTGCCCCCAAAGACTTCCACTGAAAGCCATAAACTG 1339811 Query 20568 GTCCCAAATCCCCCTCCCTTCTG 20590 | || |||| ||| || ||||| Sbjct 1339812 GGCCTAAATACCCTTCTGTTCTG 1339834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441010885338320