Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5812 132 1e-25 seq10551 125 2e-23 seq4924 120 7e-22 seq65594 100 7e-16 seq7793 100 7e-16 seq65597 96.9 8e-15 seq4361 96.9 8e-15 seq3210 95.1 3e-14 seq5356 89.7 1e-12 seq13474 87.8 4e-12 seq7281 87.8 4e-12 >seq5812 Length=6624047 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| || |||||||||||||| | || ||||| || ||| Sbjct 3076715 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAG 3076656 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || || || |||||||| || || || ||||| Sbjct 3076655 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 3076596 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| ||||||| ||||| ||| Sbjct 3076595 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACG 3076536 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3076535 AAGATCTGCAT 3076525 >seq10551 Length=27482606 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| |||| || ||||| || || ||||| | || || ||||| ||||| Sbjct 16152389 ACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 16152330 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||| || || || ||| |||| | || ||| | || ||| |||| |||| |||| Sbjct 16152329 AGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGG 16152270 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || |||||||| | ||| | ||| || ||||| ||||| |||||| Sbjct 16152269 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGGTCTTC 16152210 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| |||||||| Sbjct 16152209 CCGGTAAGGGTTTTCACGAAAATCTGCAT 16152181 >seq4924 Length=6499587 Score = 120 bits (132), Expect = 7e-22 Identities = 146/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 3090856 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 3090915 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || ||||| ||||||||||| || || ||||| Sbjct 3090916 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 3090972 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 3090973 TTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 3091032 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 3091033 ACGAAGATTTGCATTTTG 3091050 >seq65594 Length=21052295 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||| | | |||| || | || | |||| ||||| || Sbjct 7854629 TCTTTCCAGATATTATAGTCTGAAAAACTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAA 7854570 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | || ||| | || || || |||||||| ||||| |||||| Sbjct 7854569 ATTAGACGCTGCTGGTCAGGTGTGATGCTCTCCTTGTCTTGGATTTTAGCTTTGACGTTT 7854510 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | ||| || | || || ||||| ||||| ||||| || |||||| ||||||| Sbjct 7854509 TCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGAATCTTGACA 7854450 Query 288463 AATATCTGCA 288472 || || |||| Sbjct 7854449 AACATTTGCA 7854440 >seq7793 Length=19070987 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| | ||| |||| | |||||| | ||||| || || || ||||||||||| Sbjct 18919821 TTTTAGTCTGAGAGAGTGCAGCTGTCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGC 18919762 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || | |||||| || || || || |||||||| ||||| |||||||| | | || Sbjct 18919761 TGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTTTCAGTGGTGTCA 18919702 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCG----GTCAGAGTCTTGACGAATATCTG 288470 || | || || ||||| | ||| ||||| ||| ||||| |||| || || ||||| Sbjct 18919701 CTGGGCTCGACCTCGAGTGCGATGGTCTTGCCGCAATGTCAGGCTCTTCACAAAGATCTG 18919642 Query 288471 CAT 288473 ||| Sbjct 18919641 CAT 18919639 >seq65597 Length=65395183 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || |||| | ||| || | ||||| | || || Sbjct 11098443 TCTTTCTGGATATTGTAGTCTGAGAAAGTGCAGCTGTCCTCCAGCTGTTTGCGGGCAAAA 11098384 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||| ||| || | || ||| |||| || || ||||||| ||||| | ||| Sbjct 11098383 ATCAGACACTGCTGGCCAGGTGAGATGTCTTCCTTGTCTCGGATTTTAGCTTTGATGTTG 11098324 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | | || || || ||||| ||||| || ||||||||||| ||| Sbjct 11098323 TCAGTGGTGTCACTGAACTTGACCTCAAGTGTGATGGTCTTGCCTGTCAGAGTCTTCACG 11098264 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11098263 AAGATCTGCAT 11098253 >seq4361 Length=21435851 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | | | ||||| || | || | ||||| || || || Sbjct 2916434 TCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTCTCCAGCTGTTTGCCCGCAAAA 2916493 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| || || | |||||| || || || || ||| |||| ||||| |||||| Sbjct 2916494 CTCAGACCCTCCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGGTTTTAGCTTTGACGTTT 2916553 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | | || ||| | ||||| ||||| || |||| ||||| || Sbjct 2916554 TCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTGCCCATCAGGGTCTTCACA 2916613 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 2916614 AAGATTTGCAT 2916624 >seq3210 Length=13039658 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| | |||||||||||| | ||| ||| | || || || | ||||| || || || || Sbjct 3757145 TTTCTAGATATTATAGTCTGAGAGAGTGAGGCCATCCTCCACATGTTTGCCCGCAAAAAT 3757086 Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 | ||||||| || | | |||||| || || || || |||||||| ||||| || ||||| Sbjct 3757085 CGGACGCTGCTGGGCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTTTC 3757026 Query 288405 TATAG-AATCGCTCGATTCTACTTC------GAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 | | || || || | ||||| || |||| ||||||||||||| |||| Sbjct 3757025 AAGGGTTGTCACTGGACTTGACTTCAAGTATGACGGTGACGGTCTTCCCGGTCAAGGTCT 3756966 Query 288458 TGACGAATATCTGC 288471 | |||| |||||| Sbjct 3756965 TCACGATGATCTGC 3756952 >seq5356 Length=12050920 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||| |||||||||| | ||| | || || | || | ||||| |||| || Sbjct 274675 TCTTTTTGGGTATTATAGTCTGAGAGAGCACGGCCAGCCTCCAGCTGTTTGTCTGCAAAA 274734 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || | ||||||||| ||||| || || Sbjct 274735 ATCAGACGCTGCTG-----GCGGGATGCCCTCCTTGTTCTGGATTTTAGCTTTGACATTC 274789 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGC----GTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||| | || || | || || |||||| ||||| ||||| || ||||| |||| Sbjct 274790 TCTACGGTGTCACTGGGCTCGACCTCGAGCTAGTGTGATGGTCTTTCCCGTCAGGATCTT 274849 Query 288459 GACGAATATCTG 288470 | || ||||| Sbjct 274850 CAGCAAGATCTG 274861 >seq13474 Length=40992597 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | | | ||||| ||| || ||||| | || ||||| | Sbjct 16257502 CCACCATGAAGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGAC 16257443 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || ||| ||| | |||| | |||| Sbjct 16257442 AAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAATCTTTGCTGATCAGAA--- 16257386 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || ||||||| | | | | ||| Sbjct 16257385 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTAACTGAAGCTTCA 16257326 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||| |||||||| | || || || | ||| |||||||| Sbjct 16257325 ACCTCGAGAATGATAGTCTTCCCTATAAGGGTTTTCATGAAAATCTGCAT 16257276 >seq7281 Length=49932807 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | ||| ||| | || || || | |||||| || | || Sbjct 21673427 TCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGTTGTTTGCCCACAAAA 21673486 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| || || | | |||| || | ||| || |||||||| ||||| || || Sbjct 21673487 ATCAGATCCTACTGGTTAGGTAGGATGCCCTTTTTGTCTTGGATTTTAGCTTTGACATTC 21673546 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||| | | || || | | | | ||| | ||| ||||| || |||||||| || || Sbjct 21673547 TCTGTGGTGTCACTGGGCTTGATCTTGAGTGAGATGGTCTTGCCAGTCAGAGTATTCACA 21673606 Query 288463 AATATCTGCAT 288473 | |||||||| Sbjct 21673607 GAAATCTGCAT 21673617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178662930705444